Experiment: 24hr PHYTO11 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS03970 and BPHYT_RS03975 are separated by 877 nucleotides BPHYT_RS03975 and BPHYT_RS03980 are separated by 87 nucleotides
BPHYT_RS03970: BPHYT_RS03970 - hypothetical protein, at 900,573 to 902,780
_RS03970
BPHYT_RS03975: BPHYT_RS03975 - AraC family transcriptional regulator, at 903,658 to 904,641
_RS03975
BPHYT_RS03980: BPHYT_RS03980 - mannose-1-phosphate guanyltransferase, at 904,729 to 906,276
_RS03980
Position (kb) 903
904
905 Strain fitness (log2 ratio) -1
0
1 at 902.844 kb on + strand at 902.955 kb on - strand at 902.980 kb on + strand at 903.006 kb on - strand at 903.114 kb on + strand at 903.455 kb on + strand at 903.455 kb on + strand at 903.717 kb on + strand at 903.717 kb on + strand at 903.835 kb on + strand, within BPHYT_RS03975 at 903.925 kb on + strand, within BPHYT_RS03975 at 903.947 kb on - strand, within BPHYT_RS03975 at 904.078 kb on + strand, within BPHYT_RS03975 at 904.079 kb on - strand, within BPHYT_RS03975 at 904.079 kb on - strand, within BPHYT_RS03975 at 904.444 kb on - strand, within BPHYT_RS03975 at 905.386 kb on + strand, within BPHYT_RS03980 at 905.386 kb on + strand, within BPHYT_RS03980 at 905.387 kb on - strand, within BPHYT_RS03980 at 905.387 kb on - strand, within BPHYT_RS03980 at 905.512 kb on + strand, within BPHYT_RS03980 at 905.512 kb on + strand, within BPHYT_RS03980 at 905.567 kb on - strand, within BPHYT_RS03980
Per-strain Table
Position Strand Gene LocusTag Fraction 24hr PHYTO11 MOI 1 remove 902,844 + +0.8 902,955 - -1.1 902,980 + +0.5 903,006 - -0.0 903,114 + -1.0 903,455 + -0.7 903,455 + +0.2 903,717 + +0.0 903,717 + -0.2 903,835 + BPHYT_RS03975 0.18 -1.7 903,925 + BPHYT_RS03975 0.27 -0.5 903,947 - BPHYT_RS03975 0.29 -1.4 904,078 + BPHYT_RS03975 0.43 -0.1 904,079 - BPHYT_RS03975 0.43 -0.7 904,079 - BPHYT_RS03975 0.43 -0.2 904,444 - BPHYT_RS03975 0.80 -1.6 905,386 + BPHYT_RS03980 0.42 +0.1 905,386 + BPHYT_RS03980 0.42 +0.9 905,387 - BPHYT_RS03980 0.43 +0.0 905,387 - BPHYT_RS03980 0.43 -0.8 905,512 + BPHYT_RS03980 0.51 +0.0 905,512 + BPHYT_RS03980 0.51 -0.2 905,567 - BPHYT_RS03980 0.54 -0.5
Or see this region's nucleotide sequence