Experiment: 24hr PHYTO11 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS03000 and BPHYT_RS03005 overlap by 4 nucleotides BPHYT_RS03005 and BPHYT_RS03010 are separated by 39 nucleotides BPHYT_RS03010 and BPHYT_RS03015 are separated by 34 nucleotides
BPHYT_RS03000: BPHYT_RS03000 - acyl-CoA dehydrogenase, at 668,604 to 669,767
_RS03000
BPHYT_RS03005: BPHYT_RS03005 - CoA transferase, at 669,764 to 670,954
_RS03005
BPHYT_RS03010: BPHYT_RS03010 - GntR family transcriptional regulator, at 670,994 to 671,752
_RS03010
BPHYT_RS03015: BPHYT_RS03015 - aldolase, at 671,787 to 672,599
_RS03015
Position (kb) 669
670
671 Strain fitness (log2 ratio) -2
-1
0
1
2 at 668.817 kb on + strand, within BPHYT_RS03000 at 668.817 kb on + strand, within BPHYT_RS03000 at 668.933 kb on + strand, within BPHYT_RS03000 at 668.934 kb on - strand, within BPHYT_RS03000 at 668.937 kb on + strand, within BPHYT_RS03000 at 668.938 kb on - strand, within BPHYT_RS03000 at 669.052 kb on - strand, within BPHYT_RS03000 at 669.224 kb on + strand, within BPHYT_RS03000 at 669.225 kb on - strand, within BPHYT_RS03000 at 669.319 kb on + strand, within BPHYT_RS03000 at 669.406 kb on - strand, within BPHYT_RS03000 at 669.406 kb on - strand, within BPHYT_RS03000 at 669.406 kb on - strand, within BPHYT_RS03000 at 669.532 kb on - strand, within BPHYT_RS03000 at 669.532 kb on - strand, within BPHYT_RS03000 at 669.637 kb on - strand, within BPHYT_RS03000 at 669.654 kb on + strand at 669.655 kb on - strand at 669.693 kb on - strand at 669.693 kb on - strand at 670.095 kb on - strand, within BPHYT_RS03005 at 670.095 kb on - strand, within BPHYT_RS03005 at 670.148 kb on + strand, within BPHYT_RS03005 at 670.190 kb on + strand, within BPHYT_RS03005 at 670.191 kb on - strand, within BPHYT_RS03005 at 670.387 kb on + strand, within BPHYT_RS03005 at 670.388 kb on - strand, within BPHYT_RS03005 at 670.398 kb on - strand, within BPHYT_RS03005 at 670.413 kb on - strand, within BPHYT_RS03005 at 670.484 kb on + strand, within BPHYT_RS03005 at 670.484 kb on + strand, within BPHYT_RS03005 at 670.484 kb on + strand, within BPHYT_RS03005 at 670.953 kb on - strand at 671.033 kb on + strand at 671.033 kb on + strand at 671.285 kb on + strand, within BPHYT_RS03010 at 671.287 kb on + strand, within BPHYT_RS03010 at 671.287 kb on + strand, within BPHYT_RS03010 at 671.450 kb on + strand, within BPHYT_RS03010 at 671.450 kb on + strand, within BPHYT_RS03010 at 671.450 kb on + strand, within BPHYT_RS03010 at 671.450 kb on + strand, within BPHYT_RS03010 at 671.451 kb on - strand, within BPHYT_RS03010 at 671.451 kb on - strand, within BPHYT_RS03010 at 671.451 kb on - strand, within BPHYT_RS03010 at 671.451 kb on - strand, within BPHYT_RS03010 at 671.452 kb on + strand, within BPHYT_RS03010 at 671.452 kb on + strand, within BPHYT_RS03010 at 671.510 kb on + strand, within BPHYT_RS03010 at 671.714 kb on + strand at 671.714 kb on + strand at 671.715 kb on - strand at 671.715 kb on - strand at 671.802 kb on + strand at 671.803 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 24hr PHYTO11 MOI 1 remove 668,817 + BPHYT_RS03000 0.18 +0.1 668,817 + BPHYT_RS03000 0.18 -0.4 668,933 + BPHYT_RS03000 0.28 -0.5 668,934 - BPHYT_RS03000 0.28 +0.5 668,937 + BPHYT_RS03000 0.29 -0.9 668,938 - BPHYT_RS03000 0.29 -0.9 669,052 - BPHYT_RS03000 0.38 -2.3 669,224 + BPHYT_RS03000 0.53 -0.9 669,225 - BPHYT_RS03000 0.53 -0.9 669,319 + BPHYT_RS03000 0.61 -0.2 669,406 - BPHYT_RS03000 0.69 +0.6 669,406 - BPHYT_RS03000 0.69 +0.0 669,406 - BPHYT_RS03000 0.69 +0.8 669,532 - BPHYT_RS03000 0.80 +0.5 669,532 - BPHYT_RS03000 0.80 -0.2 669,637 - BPHYT_RS03000 0.89 +1.4 669,654 + +2.1 669,655 - -0.5 669,693 - +0.4 669,693 - +0.1 670,095 - BPHYT_RS03005 0.28 +0.1 670,095 - BPHYT_RS03005 0.28 -0.1 670,148 + BPHYT_RS03005 0.32 -0.8 670,190 + BPHYT_RS03005 0.36 -0.5 670,191 - BPHYT_RS03005 0.36 -0.5 670,387 + BPHYT_RS03005 0.52 +0.1 670,388 - BPHYT_RS03005 0.52 -0.6 670,398 - BPHYT_RS03005 0.53 -0.4 670,413 - BPHYT_RS03005 0.54 -0.1 670,484 + BPHYT_RS03005 0.60 -1.2 670,484 + BPHYT_RS03005 0.60 -0.3 670,484 + BPHYT_RS03005 0.60 -0.2 670,953 - -0.6 671,033 + +0.6 671,033 + +0.5 671,285 + BPHYT_RS03010 0.38 -1.5 671,287 + BPHYT_RS03010 0.39 +0.6 671,287 + BPHYT_RS03010 0.39 +1.5 671,450 + BPHYT_RS03010 0.60 +0.3 671,450 + BPHYT_RS03010 0.60 -0.5 671,450 + BPHYT_RS03010 0.60 -0.7 671,450 + BPHYT_RS03010 0.60 -0.2 671,451 - BPHYT_RS03010 0.60 +0.1 671,451 - BPHYT_RS03010 0.60 -1.0 671,451 - BPHYT_RS03010 0.60 +0.8 671,451 - BPHYT_RS03010 0.60 -1.0 671,452 + BPHYT_RS03010 0.60 +1.1 671,452 + BPHYT_RS03010 0.60 +0.1 671,510 + BPHYT_RS03010 0.68 +0.9 671,714 + -0.7 671,714 + -0.3 671,715 - -0.7 671,715 - -0.0 671,802 + +0.1 671,803 - -0.7
Or see this region's nucleotide sequence