Experiment: 24hr PHYTO11 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS02730 and BPHYT_RS02735 overlap by 8 nucleotides BPHYT_RS02735 and BPHYT_RS02740 are separated by 38 nucleotides
BPHYT_RS02730: BPHYT_RS02730 - N-acetylglucosamine-6-phosphate deacetylase (EC 3.5.1.25) <small>(from data)</small>, at 611,479 to 612,582
_RS02730
BPHYT_RS02735: BPHYT_RS02735 - Glucosamine-6-phosphate deaminase [isomerizing], alternative (EC 3.5.99.6) <small>(from data)</small>, at 612,575 to 613,582
_RS02735
BPHYT_RS02740: BPHYT_RS02740 - N-acetylglucosamine-specific PTS system, I, HPr, and IIA components (nagF) <small>(from data)</small>, at 613,621 to 616,185
_RS02740
Position (kb) 612
613
614 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 611.599 kb on + strand, within BPHYT_RS02730 at 611.600 kb on - strand, within BPHYT_RS02730 at 611.845 kb on + strand, within BPHYT_RS02730 at 611.846 kb on - strand, within BPHYT_RS02730 at 611.846 kb on - strand, within BPHYT_RS02730 at 611.917 kb on + strand, within BPHYT_RS02730 at 611.918 kb on - strand, within BPHYT_RS02730 at 612.040 kb on + strand, within BPHYT_RS02730 at 612.040 kb on + strand, within BPHYT_RS02730 at 612.040 kb on + strand, within BPHYT_RS02730 at 612.040 kb on + strand, within BPHYT_RS02730 at 612.241 kb on + strand, within BPHYT_RS02730 at 612.241 kb on + strand, within BPHYT_RS02730 at 612.242 kb on - strand, within BPHYT_RS02730 at 612.242 kb on - strand, within BPHYT_RS02730 at 612.242 kb on - strand, within BPHYT_RS02730 at 612.245 kb on + strand, within BPHYT_RS02730 at 612.246 kb on - strand, within BPHYT_RS02730 at 612.426 kb on - strand, within BPHYT_RS02730 at 612.426 kb on - strand, within BPHYT_RS02730 at 612.458 kb on - strand, within BPHYT_RS02730 at 612.458 kb on - strand, within BPHYT_RS02730 at 612.574 kb on + strand at 612.574 kb on + strand at 612.575 kb on - strand at 612.581 kb on - strand at 613.013 kb on + strand, within BPHYT_RS02735 at 613.013 kb on + strand, within BPHYT_RS02735 at 613.013 kb on + strand, within BPHYT_RS02735 at 613.014 kb on - strand, within BPHYT_RS02735 at 613.014 kb on - strand, within BPHYT_RS02735 at 613.014 kb on - strand, within BPHYT_RS02735 at 613.014 kb on - strand, within BPHYT_RS02735 at 613.014 kb on - strand, within BPHYT_RS02735 at 613.014 kb on - strand, within BPHYT_RS02735 at 613.016 kb on - strand at 613.016 kb on - strand, within BPHYT_RS02735 at 613.112 kb on - strand, within BPHYT_RS02735 at 613.432 kb on + strand, within BPHYT_RS02735 at 613.497 kb on - strand at 613.642 kb on - strand at 613.642 kb on - strand at 613.642 kb on - strand at 613.779 kb on + strand at 613.854 kb on + strand at 613.854 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction 24hr PHYTO11 MOI 1 remove 611,599 + BPHYT_RS02730 0.11 -0.4 611,600 - BPHYT_RS02730 0.11 -0.2 611,845 + BPHYT_RS02730 0.33 -0.9 611,846 - BPHYT_RS02730 0.33 -1.9 611,846 - BPHYT_RS02730 0.33 +1.0 611,917 + BPHYT_RS02730 0.40 -0.8 611,918 - BPHYT_RS02730 0.40 -1.1 612,040 + BPHYT_RS02730 0.51 -1.3 612,040 + BPHYT_RS02730 0.51 -0.2 612,040 + BPHYT_RS02730 0.51 +3.1 612,040 + BPHYT_RS02730 0.51 +0.5 612,241 + BPHYT_RS02730 0.69 +0.6 612,241 + BPHYT_RS02730 0.69 -1.2 612,242 - BPHYT_RS02730 0.69 +0.2 612,242 - BPHYT_RS02730 0.69 -0.1 612,242 - BPHYT_RS02730 0.69 +1.6 612,245 + BPHYT_RS02730 0.69 +0.3 612,246 - BPHYT_RS02730 0.69 -0.3 612,426 - BPHYT_RS02730 0.86 -0.1 612,426 - BPHYT_RS02730 0.86 +0.7 612,458 - BPHYT_RS02730 0.89 -1.3 612,458 - BPHYT_RS02730 0.89 +1.1 612,574 + -0.3 612,574 + -0.5 612,575 - +1.1 612,581 - -0.0 613,013 + BPHYT_RS02735 0.43 -1.2 613,013 + BPHYT_RS02735 0.43 -0.9 613,013 + BPHYT_RS02735 0.43 -0.8 613,014 - BPHYT_RS02735 0.44 +0.7 613,014 - BPHYT_RS02735 0.44 -2.6 613,014 - BPHYT_RS02735 0.44 -0.7 613,014 - BPHYT_RS02735 0.44 -0.2 613,014 - BPHYT_RS02735 0.44 -1.6 613,014 - BPHYT_RS02735 0.44 -2.2 613,016 - +1.1 613,016 - BPHYT_RS02735 0.44 -0.4 613,112 - BPHYT_RS02735 0.53 -0.2 613,432 + BPHYT_RS02735 0.85 -1.0 613,497 - -0.2 613,642 - -0.6 613,642 - -1.2 613,642 - -0.7 613,779 + +0.3 613,854 + +0.1 613,854 + +0.3
Or see this region's nucleotide sequence