Experiment: 24hr PHYTO11 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS01190 and BPHYT_RS01195 are separated by 800 nucleotides BPHYT_RS01195 and BPHYT_RS01200 are separated by 52 nucleotides
BPHYT_RS01190: BPHYT_RS01190 - hypothetical protein, at 273,598 to 274,338
_RS01190
BPHYT_RS01195: BPHYT_RS01195 - hypothetical protein, at 275,139 to 277,109
_RS01195
BPHYT_RS01200: BPHYT_RS01200 - hypothetical protein, at 277,162 to 279,012
_RS01200
Position (kb) 275
276
277
278 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 274.376 kb on - strand at 274.573 kb on + strand at 274.659 kb on - strand at 274.671 kb on - strand at 274.672 kb on + strand at 274.702 kb on - strand at 274.835 kb on + strand at 274.836 kb on - strand at 274.887 kb on - strand at 274.943 kb on + strand at 275.272 kb on - strand at 275.276 kb on + strand at 275.277 kb on - strand at 275.277 kb on - strand at 275.304 kb on + strand at 275.411 kb on + strand, within BPHYT_RS01195 at 275.411 kb on + strand, within BPHYT_RS01195 at 275.412 kb on - strand, within BPHYT_RS01195 at 275.463 kb on + strand, within BPHYT_RS01195 at 275.623 kb on - strand, within BPHYT_RS01195 at 275.886 kb on - strand, within BPHYT_RS01195 at 275.928 kb on + strand, within BPHYT_RS01195 at 276.005 kb on - strand, within BPHYT_RS01195 at 276.005 kb on - strand, within BPHYT_RS01195 at 276.005 kb on - strand, within BPHYT_RS01195 at 276.005 kb on - strand, within BPHYT_RS01195 at 276.008 kb on + strand, within BPHYT_RS01195 at 276.122 kb on + strand, within BPHYT_RS01195 at 276.211 kb on - strand, within BPHYT_RS01195 at 276.440 kb on + strand, within BPHYT_RS01195 at 276.567 kb on + strand, within BPHYT_RS01195 at 276.576 kb on + strand, within BPHYT_RS01195 at 276.577 kb on - strand, within BPHYT_RS01195 at 276.577 kb on - strand, within BPHYT_RS01195 at 276.856 kb on - strand, within BPHYT_RS01195 at 277.009 kb on + strand at 277.009 kb on + strand at 277.071 kb on - strand at 277.090 kb on + strand at 277.135 kb on + strand at 277.136 kb on - strand at 277.150 kb on - strand at 277.186 kb on - strand at 277.195 kb on + strand at 277.199 kb on - strand at 277.199 kb on - strand at 277.266 kb on + strand at 277.267 kb on - strand at 277.366 kb on + strand, within BPHYT_RS01200 at 277.408 kb on + strand, within BPHYT_RS01200 at 277.408 kb on + strand, within BPHYT_RS01200 at 277.409 kb on - strand, within BPHYT_RS01200 at 277.594 kb on + strand, within BPHYT_RS01200 at 277.751 kb on - strand, within BPHYT_RS01200 at 277.751 kb on - strand, within BPHYT_RS01200 at 277.754 kb on - strand, within BPHYT_RS01200 at 277.808 kb on - strand, within BPHYT_RS01200 at 277.808 kb on - strand, within BPHYT_RS01200 at 277.892 kb on - strand, within BPHYT_RS01200 at 277.892 kb on - strand, within BPHYT_RS01200 at 278.037 kb on - strand, within BPHYT_RS01200 at 278.080 kb on + strand, within BPHYT_RS01200
Per-strain Table
Position Strand Gene LocusTag Fraction 24hr PHYTO11 MOI 1 remove 274,376 - -0.2 274,573 + +0.3 274,659 - -0.0 274,671 - -0.4 274,672 + -0.8 274,702 - +1.4 274,835 + -1.2 274,836 - +0.2 274,887 - -0.7 274,943 + -2.4 275,272 - +0.9 275,276 + +0.4 275,277 - +0.5 275,277 - -0.2 275,304 + -0.2 275,411 + BPHYT_RS01195 0.14 +0.6 275,411 + BPHYT_RS01195 0.14 -0.2 275,412 - BPHYT_RS01195 0.14 -0.6 275,463 + BPHYT_RS01195 0.16 -0.6 275,623 - BPHYT_RS01195 0.25 -2.2 275,886 - BPHYT_RS01195 0.38 -1.4 275,928 + BPHYT_RS01195 0.40 +0.7 276,005 - BPHYT_RS01195 0.44 +0.4 276,005 - BPHYT_RS01195 0.44 -0.2 276,005 - BPHYT_RS01195 0.44 +0.3 276,005 - BPHYT_RS01195 0.44 +0.7 276,008 + BPHYT_RS01195 0.44 +0.1 276,122 + BPHYT_RS01195 0.50 -0.8 276,211 - BPHYT_RS01195 0.54 -1.3 276,440 + BPHYT_RS01195 0.66 -0.1 276,567 + BPHYT_RS01195 0.72 +0.0 276,576 + BPHYT_RS01195 0.73 -0.3 276,577 - BPHYT_RS01195 0.73 -0.6 276,577 - BPHYT_RS01195 0.73 +0.7 276,856 - BPHYT_RS01195 0.87 -0.7 277,009 + -1.7 277,009 + -0.0 277,071 - +0.2 277,090 + +0.2 277,135 + +1.5 277,136 - -0.5 277,150 - -2.8 277,186 - -0.3 277,195 + -1.1 277,199 - -1.0 277,199 - +0.1 277,266 + +0.1 277,267 - +0.2 277,366 + BPHYT_RS01200 0.11 -0.2 277,408 + BPHYT_RS01200 0.13 -0.1 277,408 + BPHYT_RS01200 0.13 +0.1 277,409 - BPHYT_RS01200 0.13 -0.1 277,594 + BPHYT_RS01200 0.23 +0.2 277,751 - BPHYT_RS01200 0.32 +0.9 277,751 - BPHYT_RS01200 0.32 +0.2 277,754 - BPHYT_RS01200 0.32 -0.6 277,808 - BPHYT_RS01200 0.35 -1.3 277,808 - BPHYT_RS01200 0.35 +0.1 277,892 - BPHYT_RS01200 0.39 -0.1 277,892 - BPHYT_RS01200 0.39 -0.1 278,037 - BPHYT_RS01200 0.47 -0.3 278,080 + BPHYT_RS01200 0.50 -0.5
Or see this region's nucleotide sequence