Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS28200

Experiment: 24hr PHYTO9 MOI 0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS28190 and BPHYT_RS28195 are separated by 243 nucleotidesBPHYT_RS28195 and BPHYT_RS28200 are separated by 101 nucleotidesBPHYT_RS28200 and BPHYT_RS28205 are separated by 92 nucleotides BPHYT_RS28190: BPHYT_RS28190 - porin, at 1,883,195 to 1,884,280 _RS28190 BPHYT_RS28195: BPHYT_RS28195 - hypothetical protein, at 1,884,524 to 1,884,850 _RS28195 BPHYT_RS28200: BPHYT_RS28200 - sugar ABC transporter substrate-binding protein, at 1,884,952 to 1,885,959 _RS28200 BPHYT_RS28205: BPHYT_RS28205 - ATPase, at 1,886,052 to 1,887,068 _RS28205 Position (kb) 1884 1885 1886Strain fitness (log2 ratio) -1 0 1at 1885.251 kb on + strand, within BPHYT_RS28200at 1885.719 kb on - strand, within BPHYT_RS28200at 1886.358 kb on - strand, within BPHYT_RS28205at 1886.359 kb on + strand, within BPHYT_RS28205at 1886.533 kb on - strand, within BPHYT_RS28205at 1886.559 kb on - strand, within BPHYT_RS28205at 1886.594 kb on + strand, within BPHYT_RS28205at 1886.596 kb on + strand, within BPHYT_RS28205at 1886.642 kb on - strand, within BPHYT_RS28205at 1886.919 kb on + strand, within BPHYT_RS28205

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Per-strain Table

Position Strand Gene LocusTag Fraction 24hr PHYTO9 MOI 0.1
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1,885,251 + BPHYT_RS28200 0.30 -0.0
1,885,719 - BPHYT_RS28200 0.76 +1.0
1,886,358 - BPHYT_RS28205 0.30 -0.3
1,886,359 + BPHYT_RS28205 0.30 -0.8
1,886,533 - BPHYT_RS28205 0.47 +0.6
1,886,559 - BPHYT_RS28205 0.50 -0.8
1,886,594 + BPHYT_RS28205 0.53 +0.3
1,886,596 + BPHYT_RS28205 0.53 -0.7
1,886,642 - BPHYT_RS28205 0.58 -0.5
1,886,919 + BPHYT_RS28205 0.85 +0.7

Or see this region's nucleotide sequence