Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS25690

Experiment: 24hr PHYTO9 MOI 0.1

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBPHYT_RS25680 and BPHYT_RS25685 are separated by 233 nucleotidesBPHYT_RS25685 and BPHYT_RS25690 are separated by 14 nucleotidesBPHYT_RS25690 and BPHYT_RS25695 are separated by 56 nucleotidesBPHYT_RS25695 and BPHYT_RS25700 are separated by 127 nucleotides BPHYT_RS25680: BPHYT_RS25680 - GntR family transcriptional regulator, at 1,335,175 to 1,335,804 _RS25680 BPHYT_RS25685: BPHYT_RS25685 - damage-inducible protein DinB, at 1,336,038 to 1,336,556 _RS25685 BPHYT_RS25690: BPHYT_RS25690 - GntR family transcriptional regulator, at 1,336,571 to 1,337,380 _RS25690 BPHYT_RS25695: BPHYT_RS25695 - enoyl-CoA hydratase, at 1,337,437 to 1,338,168 _RS25695 BPHYT_RS25700: BPHYT_RS25700 - MFS transporter, at 1,338,296 to 1,339,696 _RS25700 Position (kb) 1336 1337 1338Strain fitness (log2 ratio) -2 -1 0 1at 1335.915 kb on + strandat 1335.916 kb on - strandat 1336.148 kb on - strand, within BPHYT_RS25685at 1336.335 kb on + strandat 1336.403 kb on - strand, within BPHYT_RS25685at 1336.403 kb on - strand, within BPHYT_RS25685at 1336.403 kb on - strand, within BPHYT_RS25685at 1336.406 kb on + strand, within BPHYT_RS25685at 1337.192 kb on + strand, within BPHYT_RS25690at 1337.422 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 24hr PHYTO9 MOI 0.1
remove
1,335,915 + -0.0
1,335,916 - +1.1
1,336,148 - BPHYT_RS25685 0.21 -0.4
1,336,335 + -0.6
1,336,403 - BPHYT_RS25685 0.70 -0.8
1,336,403 - BPHYT_RS25685 0.70 -0.5
1,336,403 - BPHYT_RS25685 0.70 +0.1
1,336,406 + BPHYT_RS25685 0.71 -1.2
1,337,192 + BPHYT_RS25690 0.77 -0.3
1,337,422 - -1.9

Or see this region's nucleotide sequence