Experiment: 24hr PHYTO9 MOI 0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS07060 and BPHYT_RS07065 are separated by 48 nucleotides BPHYT_RS07065 and BPHYT_RS07070 are separated by 162 nucleotides BPHYT_RS07070 and BPHYT_RS07075 are separated by 10 nucleotides BPHYT_RS07075 and BPHYT_RS07080 are separated by 71 nucleotides
BPHYT_RS07060: BPHYT_RS07060 - aldo/keto reductase, at 1,596,947 to 1,597,972
_RS07060
BPHYT_RS07065: BPHYT_RS07065 - 3-ketoacyl-ACP reductase, at 1,598,021 to 1,598,764
_RS07065
BPHYT_RS07070: BPHYT_RS07070 - transcriptional regulator, at 1,598,927 to 1,599,838
_RS07070
BPHYT_RS07075: BPHYT_RS07075 - glyoxalase/bleomycin resistance protein/dioxygenase, at 1,599,849 to 1,600,259
_RS07075
BPHYT_RS07080: BPHYT_RS07080 - glutathione S-transferase, at 1,600,331 to 1,601,341
_RS07080
Position (kb) 1598
1599
1600 Strain fitness (log2 ratio) -2
-1
0
1 at 1598.132 kb on + strand, within BPHYT_RS07065 at 1598.132 kb on + strand, within BPHYT_RS07065 at 1598.132 kb on + strand, within BPHYT_RS07065 at 1598.310 kb on + strand, within BPHYT_RS07065 at 1598.336 kb on - strand, within BPHYT_RS07065 at 1598.439 kb on + strand, within BPHYT_RS07065 at 1598.439 kb on + strand, within BPHYT_RS07065 at 1598.653 kb on - strand, within BPHYT_RS07065 at 1598.653 kb on - strand, within BPHYT_RS07065 at 1599.119 kb on + strand, within BPHYT_RS07070 at 1599.120 kb on - strand, within BPHYT_RS07070 at 1599.432 kb on - strand, within BPHYT_RS07070 at 1599.495 kb on - strand, within BPHYT_RS07070 at 1599.556 kb on - strand, within BPHYT_RS07070 at 1599.604 kb on + strand, within BPHYT_RS07070 at 1599.604 kb on + strand, within BPHYT_RS07070 at 1599.650 kb on + strand, within BPHYT_RS07070 at 1599.737 kb on + strand, within BPHYT_RS07070 at 1599.738 kb on - strand, within BPHYT_RS07070 at 1600.027 kb on + strand, within BPHYT_RS07075 at 1600.336 kb on + strand at 1600.459 kb on - strand, within BPHYT_RS07080 at 1600.728 kb on + strand, within BPHYT_RS07080
Per-strain Table
Position Strand Gene LocusTag Fraction 24hr PHYTO9 MOI 0.1 remove 1,598,132 + BPHYT_RS07065 0.15 +0.7 1,598,132 + BPHYT_RS07065 0.15 -0.0 1,598,132 + BPHYT_RS07065 0.15 +0.3 1,598,310 + BPHYT_RS07065 0.39 +0.4 1,598,336 - BPHYT_RS07065 0.42 -0.1 1,598,439 + BPHYT_RS07065 0.56 +1.1 1,598,439 + BPHYT_RS07065 0.56 +0.3 1,598,653 - BPHYT_RS07065 0.85 -0.7 1,598,653 - BPHYT_RS07065 0.85 -0.4 1,599,119 + BPHYT_RS07070 0.21 -0.2 1,599,120 - BPHYT_RS07070 0.21 -2.0 1,599,432 - BPHYT_RS07070 0.55 +0.7 1,599,495 - BPHYT_RS07070 0.62 +0.9 1,599,556 - BPHYT_RS07070 0.69 -0.6 1,599,604 + BPHYT_RS07070 0.74 +0.4 1,599,604 + BPHYT_RS07070 0.74 -0.9 1,599,650 + BPHYT_RS07070 0.79 +1.7 1,599,737 + BPHYT_RS07070 0.89 -1.0 1,599,738 - BPHYT_RS07070 0.89 -1.3 1,600,027 + BPHYT_RS07075 0.43 -0.2 1,600,336 + +0.8 1,600,459 - BPHYT_RS07080 0.13 +0.4 1,600,728 + BPHYT_RS07080 0.39 +0.7
Or see this region's nucleotide sequence