Experiment: 24hr PHYTO9 MOI 10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS03020 and BPHYT_RS03025 are separated by 299 nucleotides BPHYT_RS03025 and BPHYT_RS03030 are separated by 71 nucleotides BPHYT_RS03030 and BPHYT_RS03035 overlap by 4 nucleotides
BPHYT_RS03020: BPHYT_RS03020 - hypothetical protein, at 672,614 to 673,414
_RS03020
BPHYT_RS03025: BPHYT_RS03025 - methyl-accepting chemotaxis protein, at 673,714 to 675,363
_RS03025
BPHYT_RS03030: BPHYT_RS03030 - cytochrome C, at 675,435 to 676,244
_RS03030
BPHYT_RS03035: BPHYT_RS03035 - cytochrome C oxidase subunit I, at 676,241 to 677,866
_RS03035
Position (kb) 673
674
675
676 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 672.894 kb on + strand, within BPHYT_RS03020 at 673.031 kb on + strand, within BPHYT_RS03020 at 673.032 kb on - strand, within BPHYT_RS03020 at 673.185 kb on + strand, within BPHYT_RS03020 at 673.403 kb on + strand at 673.427 kb on + strand at 673.512 kb on + strand at 673.523 kb on - strand at 673.533 kb on - strand at 673.560 kb on - strand at 673.589 kb on + strand at 673.590 kb on - strand at 673.590 kb on - strand at 673.591 kb on + strand at 673.592 kb on - strand at 673.592 kb on - strand at 673.674 kb on - strand at 673.843 kb on + strand at 673.844 kb on - strand at 673.844 kb on - strand at 673.924 kb on + strand, within BPHYT_RS03025 at 674.192 kb on - strand, within BPHYT_RS03025 at 674.541 kb on + strand, within BPHYT_RS03025 at 674.596 kb on - strand at 674.842 kb on - strand, within BPHYT_RS03025 at 675.361 kb on + strand at 675.361 kb on + strand at 675.365 kb on - strand at 675.437 kb on - strand at 675.451 kb on + strand at 675.452 kb on - strand at 675.455 kb on - strand at 675.527 kb on + strand, within BPHYT_RS03030 at 675.527 kb on + strand, within BPHYT_RS03030 at 675.755 kb on - strand, within BPHYT_RS03030 at 675.860 kb on - strand, within BPHYT_RS03030 at 675.860 kb on - strand, within BPHYT_RS03030 at 675.918 kb on + strand, within BPHYT_RS03030 at 675.919 kb on - strand, within BPHYT_RS03030 at 676.058 kb on - strand, within BPHYT_RS03030 at 676.156 kb on - strand, within BPHYT_RS03030 at 676.317 kb on + strand at 676.317 kb on + strand at 676.318 kb on - strand at 676.318 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 24hr PHYTO9 MOI 10 remove 672,894 + BPHYT_RS03020 0.35 +0.0 673,031 + BPHYT_RS03020 0.52 -0.2 673,032 - BPHYT_RS03020 0.52 +2.1 673,185 + BPHYT_RS03020 0.71 -0.1 673,403 + -1.1 673,427 + -0.4 673,512 + +0.3 673,523 - -0.4 673,533 - -0.6 673,560 - -1.9 673,589 + -1.3 673,590 - -0.9 673,590 - +0.7 673,591 + -0.4 673,592 - -0.4 673,592 - +0.0 673,674 - +0.4 673,843 + -0.6 673,844 - +0.3 673,844 - -0.9 673,924 + BPHYT_RS03025 0.13 -1.4 674,192 - BPHYT_RS03025 0.29 -0.1 674,541 + BPHYT_RS03025 0.50 -1.4 674,596 - -0.3 674,842 - BPHYT_RS03025 0.68 +2.3 675,361 + +0.8 675,361 + -0.9 675,365 - -0.1 675,437 - +0.5 675,451 + -0.2 675,452 - +0.2 675,455 - -0.1 675,527 + BPHYT_RS03030 0.11 +1.1 675,527 + BPHYT_RS03030 0.11 +2.6 675,755 - BPHYT_RS03030 0.40 +0.5 675,860 - BPHYT_RS03030 0.52 +0.4 675,860 - BPHYT_RS03030 0.52 +0.5 675,918 + BPHYT_RS03030 0.60 +0.9 675,919 - BPHYT_RS03030 0.60 -1.1 676,058 - BPHYT_RS03030 0.77 +0.3 676,156 - BPHYT_RS03030 0.89 +0.0 676,317 + +0.3 676,317 + -2.8 676,318 - +0.2 676,318 - -0.1
Or see this region's nucleotide sequence