Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS36035

Experiment: 24hr PHYTO8 MOI 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS36025 and BPHYT_RS36030 are separated by 50 nucleotidesBPHYT_RS36030 and BPHYT_RS36035 are separated by 44 nucleotidesBPHYT_RS36035 and BPHYT_RS36040 are separated by 24 nucleotidesBPHYT_RS36040 and BPHYT_RS36045 overlap by 4 nucleotidesBPHYT_RS36045 and BPHYT_RS36050 are separated by 20 nucleotides BPHYT_RS36025: BPHYT_RS36025 - hypothetical protein, at 34,722 to 35,090 _RS36025 BPHYT_RS36030: BPHYT_RS36030 - hypothetical protein, at 35,141 to 35,560 _RS36030 BPHYT_RS36035: BPHYT_RS36035 - hypothetical protein, at 35,605 to 36,003 _RS36035 BPHYT_RS36040: BPHYT_RS36040 - hypothetical protein, at 36,028 to 36,657 _RS36040 BPHYT_RS36045: BPHYT_RS36045 - hypothetical protein, at 36,654 to 36,911 _RS36045 BPHYT_RS36050: BPHYT_RS36050 - hypothetical protein, at 36,932 to 37,393 _RS36050 Position (kb) 35 36 37Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 34.731 kb on - strandat 34.880 kb on + strand, within BPHYT_RS36025at 34.881 kb on - strand, within BPHYT_RS36025at 34.881 kb on - strand, within BPHYT_RS36025at 34.924 kb on - strand, within BPHYT_RS36025at 35.013 kb on - strand, within BPHYT_RS36025at 35.013 kb on - strand, within BPHYT_RS36025at 35.362 kb on - strand, within BPHYT_RS36030at 35.418 kb on - strand, within BPHYT_RS36030at 35.692 kb on - strand, within BPHYT_RS36035at 35.789 kb on + strand, within BPHYT_RS36035at 36.250 kb on + strand, within BPHYT_RS36040at 36.250 kb on + strand, within BPHYT_RS36040at 36.250 kb on + strand, within BPHYT_RS36040at 36.250 kb on + strand, within BPHYT_RS36040

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Per-strain Table

Position Strand Gene LocusTag Fraction 24hr PHYTO8 MOI 1
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34,731 - +0.8
34,880 + BPHYT_RS36025 0.43 -3.2
34,881 - BPHYT_RS36025 0.43 -0.4
34,881 - BPHYT_RS36025 0.43 -4.4
34,924 - BPHYT_RS36025 0.55 +1.3
35,013 - BPHYT_RS36025 0.79 +0.3
35,013 - BPHYT_RS36025 0.79 -0.0
35,362 - BPHYT_RS36030 0.53 -0.2
35,418 - BPHYT_RS36030 0.66 -0.2
35,692 - BPHYT_RS36035 0.22 -0.4
35,789 + BPHYT_RS36035 0.46 -0.7
36,250 + BPHYT_RS36040 0.35 +0.3
36,250 + BPHYT_RS36040 0.35 -0.6
36,250 + BPHYT_RS36040 0.35 -1.8
36,250 + BPHYT_RS36040 0.35 -1.5

Or see this region's nucleotide sequence