Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS35835

Experiment: 24hr PHYTO8 MOI 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS35835 and BPHYT_RS35840 are separated by 94 nucleotides BPHYT_RS35835: BPHYT_RS35835 - hypothetical protein, at 16 to 510 _RS35835 BPHYT_RS35840: BPHYT_RS35840 - hypothetical protein, at 605 to 2,401 _RS35840 Position (kb) 0 1Strain fitness (log2 ratio) -1 0 1at 0.152 kb on - strand, within BPHYT_RS35835at 0.152 kb on - strand, within BPHYT_RS35835at 0.443 kb on + strandat 0.587 kb on - strandat 0.744 kb on + strandat 0.832 kb on - strand, within BPHYT_RS35840at 0.953 kb on - strand, within BPHYT_RS35840at 1.030 kb on + strand, within BPHYT_RS35840at 1.161 kb on - strand, within BPHYT_RS35840at 1.161 kb on - strand, within BPHYT_RS35840at 1.162 kb on + strand, within BPHYT_RS35840at 1.183 kb on + strand, within BPHYT_RS35840at 1.275 kb on - strand, within BPHYT_RS35840at 1.301 kb on - strand, within BPHYT_RS35840at 1.304 kb on + strand, within BPHYT_RS35840at 1.351 kb on + strand, within BPHYT_RS35840at 1.359 kb on - strand, within BPHYT_RS35840

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Per-strain Table

Position Strand Gene LocusTag Fraction 24hr PHYTO8 MOI 1
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152 - BPHYT_RS35835 0.27 -1.4
152 - BPHYT_RS35835 0.27 -0.9
443 + +0.3
587 - +0.4
744 + +1.1
832 - BPHYT_RS35840 0.13 -0.8
953 - BPHYT_RS35840 0.19 -0.7
1,030 + BPHYT_RS35840 0.24 -0.5
1,161 - BPHYT_RS35840 0.31 -1.2
1,161 - BPHYT_RS35840 0.31 +0.6
1,162 + BPHYT_RS35840 0.31 -0.6
1,183 + BPHYT_RS35840 0.32 -0.4
1,275 - BPHYT_RS35840 0.37 -0.4
1,301 - BPHYT_RS35840 0.39 +1.6
1,304 + BPHYT_RS35840 0.39 -0.6
1,351 + BPHYT_RS35840 0.42 -0.2
1,359 - BPHYT_RS35840 0.42 -0.3

Or see this region's nucleotide sequence