Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS28380

Experiment: 24hr PHYTO8 MOI 1

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBPHYT_RS28375 and BPHYT_RS28380 are separated by 49 nucleotidesBPHYT_RS28380 and BPHYT_RS28385 are separated by 33 nucleotides BPHYT_RS28375: BPHYT_RS28375 - hypothetical protein, at 1,917,392 to 1,917,952 _RS28375 BPHYT_RS28380: BPHYT_RS28380 - lon protease, at 1,918,002 to 1,920,416 _RS28380 BPHYT_RS28385: BPHYT_RS28385 - molecular chaperone, at 1,920,450 to 1,920,830 _RS28385 Position (kb) 1918 1919 1920 1921Strain fitness (log2 ratio) -1 0 1at 1917.252 kb on - strandat 1917.783 kb on + strand, within BPHYT_RS28375at 1918.584 kb on - strand, within BPHYT_RS28380at 1918.991 kb on - strand, within BPHYT_RS28380at 1919.164 kb on + strand, within BPHYT_RS28380at 1919.165 kb on - strand, within BPHYT_RS28380at 1919.571 kb on - strand, within BPHYT_RS28380at 1920.654 kb on + strand, within BPHYT_RS28385

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 24hr PHYTO8 MOI 1
remove
1,917,252 - -0.3
1,917,783 + BPHYT_RS28375 0.70 -0.1
1,918,584 - BPHYT_RS28380 0.24 +0.8
1,918,991 - BPHYT_RS28380 0.41 +0.2
1,919,164 + BPHYT_RS28380 0.48 -0.1
1,919,165 - BPHYT_RS28380 0.48 -0.1
1,919,571 - BPHYT_RS28380 0.65 +0.0
1,920,654 + BPHYT_RS28385 0.54 -0.8

Or see this region's nucleotide sequence