Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS28060

Experiment: 24hr PHYTO8 MOI 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS28050 and BPHYT_RS28055 overlap by 4 nucleotidesBPHYT_RS28055 and BPHYT_RS28060 are separated by 129 nucleotidesBPHYT_RS28060 and BPHYT_RS28065 are separated by 288 nucleotidesBPHYT_RS28065 and BPHYT_RS28070 are separated by 152 nucleotides BPHYT_RS28050: BPHYT_RS28050 - serine protease, at 1,857,303 to 1,858,916 _RS28050 BPHYT_RS28055: BPHYT_RS28055 - membrane protein, at 1,858,913 to 1,859,686 _RS28055 BPHYT_RS28060: BPHYT_RS28060 - hypothetical protein, at 1,859,816 to 1,860,073 _RS28060 BPHYT_RS28065: BPHYT_RS28065 - hypothetical protein, at 1,860,362 to 1,860,859 _RS28065 BPHYT_RS28070: BPHYT_RS28070 - adenine permease, at 1,861,012 to 1,862,313 _RS28070 Position (kb) 1859 1860 1861Strain fitness (log2 ratio) -2 -1 0 1 2at 1859.184 kb on - strand, within BPHYT_RS28055at 1859.231 kb on + strand, within BPHYT_RS28055at 1859.232 kb on - strand, within BPHYT_RS28055at 1859.653 kb on - strandat 1859.773 kb on + strandat 1859.804 kb on + strandat 1859.866 kb on + strand, within BPHYT_RS28060at 1859.866 kb on + strand, within BPHYT_RS28060at 1859.867 kb on - strand, within BPHYT_RS28060at 1859.900 kb on + strand, within BPHYT_RS28060at 1859.900 kb on + strand, within BPHYT_RS28060at 1859.901 kb on - strand, within BPHYT_RS28060at 1859.901 kb on - strand, within BPHYT_RS28060at 1860.282 kb on - strandat 1860.319 kb on + strandat 1860.319 kb on + strandat 1860.320 kb on - strandat 1860.416 kb on + strand, within BPHYT_RS28065at 1860.417 kb on - strand, within BPHYT_RS28065at 1861.022 kb on + strandat 1861.023 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 24hr PHYTO8 MOI 1
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1,859,184 - BPHYT_RS28055 0.35 +0.1
1,859,231 + BPHYT_RS28055 0.41 -0.9
1,859,232 - BPHYT_RS28055 0.41 +0.3
1,859,653 - -0.2
1,859,773 + -0.6
1,859,804 + -0.9
1,859,866 + BPHYT_RS28060 0.19 +0.0
1,859,866 + BPHYT_RS28060 0.19 -0.4
1,859,867 - BPHYT_RS28060 0.20 +0.8
1,859,900 + BPHYT_RS28060 0.33 +0.4
1,859,900 + BPHYT_RS28060 0.33 -0.8
1,859,901 - BPHYT_RS28060 0.33 +0.3
1,859,901 - BPHYT_RS28060 0.33 -0.9
1,860,282 - +0.1
1,860,319 + +0.2
1,860,319 + -0.3
1,860,320 - -2.1
1,860,416 + BPHYT_RS28065 0.11 -1.8
1,860,417 - BPHYT_RS28065 0.11 +2.0
1,861,022 + -1.7
1,861,023 - +0.1

Or see this region's nucleotide sequence