Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS24115

Experiment: 24hr PHYTO8 MOI 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS24110 and BPHYT_RS24115 are separated by 395 nucleotidesBPHYT_RS24115 and BPHYT_RS24120 are separated by 29 nucleotides BPHYT_RS24110: BPHYT_RS24110 - hypothetical protein, at 975,530 to 976,072 _RS24110 BPHYT_RS24115: BPHYT_RS24115 - epimerase, at 976,468 to 977,304 _RS24115 BPHYT_RS24120: BPHYT_RS24120 - hexuronate transporter ExuT, at 977,334 to 978,626 _RS24120 Position (kb) 976 977 978Strain fitness (log2 ratio) -2 -1 0 1at 975.616 kb on - strand, within BPHYT_RS24110at 975.666 kb on + strand, within BPHYT_RS24110at 975.966 kb on - strand, within BPHYT_RS24110at 975.978 kb on + strand, within BPHYT_RS24110at 976.088 kb on + strandat 976.089 kb on - strandat 976.232 kb on - strandat 976.326 kb on + strandat 976.505 kb on + strandat 976.505 kb on + strandat 976.586 kb on + strand, within BPHYT_RS24115at 977.058 kb on - strand, within BPHYT_RS24115at 977.503 kb on - strand, within BPHYT_RS24120at 977.837 kb on - strand, within BPHYT_RS24120at 978.087 kb on + strand, within BPHYT_RS24120at 978.184 kb on - strand, within BPHYT_RS24120

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Per-strain Table

Position Strand Gene LocusTag Fraction 24hr PHYTO8 MOI 1
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975,616 - BPHYT_RS24110 0.16 -0.3
975,666 + BPHYT_RS24110 0.25 -1.8
975,966 - BPHYT_RS24110 0.80 -0.5
975,978 + BPHYT_RS24110 0.83 +0.6
976,088 + -0.4
976,089 - -0.2
976,232 - -0.1
976,326 + -0.3
976,505 + +0.1
976,505 + -0.5
976,586 + BPHYT_RS24115 0.14 -0.2
977,058 - BPHYT_RS24115 0.70 -1.7
977,503 - BPHYT_RS24120 0.13 -1.7
977,837 - BPHYT_RS24120 0.39 -0.6
978,087 + BPHYT_RS24120 0.58 -0.0
978,184 - BPHYT_RS24120 0.66 -1.4

Or see this region's nucleotide sequence