Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS24005

Experiment: 24hr PHYTO8 MOI 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS24000 and BPHYT_RS24005 are separated by 102 nucleotidesBPHYT_RS24005 and BPHYT_RS24010 are separated by 14 nucleotidesBPHYT_RS24010 and BPHYT_RS24015 are separated by 35 nucleotides BPHYT_RS24000: BPHYT_RS24000 - L-histidine ABC transporter, substrate-binding component (from data), at 950,479 to 951,339 _RS24000 BPHYT_RS24005: BPHYT_RS24005 - L-histidine ABC transporter, permease component 1 (from data), at 951,442 to 952,164 _RS24005 BPHYT_RS24010: BPHYT_RS24010 - L-histidine ABC transporter, permease component 2 (from data), at 952,179 to 952,931 _RS24010 BPHYT_RS24015: BPHYT_RS24015 - L-histidine ABC transporter, ATPase component (from data), at 952,967 to 953,758 _RS24015 Position (kb) 951 952 953Strain fitness (log2 ratio) -2 -1 0 1 2at 950.728 kb on - strand, within BPHYT_RS24000at 951.121 kb on + strand, within BPHYT_RS24000at 951.125 kb on - strand, within BPHYT_RS24000at 951.436 kb on + strandat 951.491 kb on + strandat 951.622 kb on + strand, within BPHYT_RS24005at 951.622 kb on + strand, within BPHYT_RS24005at 951.791 kb on - strand, within BPHYT_RS24005at 952.039 kb on + strand, within BPHYT_RS24005at 952.467 kb on + strand, within BPHYT_RS24010at 952.467 kb on + strand, within BPHYT_RS24010at 952.791 kb on + strand, within BPHYT_RS24010

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Per-strain Table

Position Strand Gene LocusTag Fraction 24hr PHYTO8 MOI 1
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950,728 - BPHYT_RS24000 0.29 +0.2
951,121 + BPHYT_RS24000 0.75 -0.7
951,125 - BPHYT_RS24000 0.75 -1.2
951,436 + +2.2
951,491 + -1.0
951,622 + BPHYT_RS24005 0.25 +1.2
951,622 + BPHYT_RS24005 0.25 -2.3
951,791 - BPHYT_RS24005 0.48 -0.8
952,039 + BPHYT_RS24005 0.83 -1.6
952,467 + BPHYT_RS24010 0.38 +0.7
952,467 + BPHYT_RS24010 0.38 +0.5
952,791 + BPHYT_RS24010 0.81 +0.2

Or see this region's nucleotide sequence