Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS23215

Experiment: 24hr PHYTO8 MOI 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS23210 and BPHYT_RS23215 are separated by 107 nucleotidesBPHYT_RS23215 and BPHYT_RS23220 are separated by 234 nucleotides BPHYT_RS23210: BPHYT_RS23210 - MFS transporter, at 772,117 to 773,367 _RS23210 BPHYT_RS23215: BPHYT_RS23215 - transcriptional regulator, at 773,475 to 774,413 _RS23215 BPHYT_RS23220: BPHYT_RS23220 - hypothetical protein, at 774,648 to 775,379 _RS23220 Position (kb) 773 774 775Strain fitness (log2 ratio) -2 -1 0 1at 772.503 kb on - strand, within BPHYT_RS23210at 772.876 kb on + strand, within BPHYT_RS23210at 774.199 kb on + strand, within BPHYT_RS23215at 774.199 kb on + strand, within BPHYT_RS23215at 774.199 kb on + strand, within BPHYT_RS23215at 774.209 kb on - strand, within BPHYT_RS23215at 774.659 kb on - strandat 774.659 kb on - strandat 774.741 kb on + strand, within BPHYT_RS23220at 775.111 kb on - strand, within BPHYT_RS23220at 775.313 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 24hr PHYTO8 MOI 1
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772,503 - BPHYT_RS23210 0.31 -1.2
772,876 + BPHYT_RS23210 0.61 +1.4
774,199 + BPHYT_RS23215 0.77 +0.0
774,199 + BPHYT_RS23215 0.77 +0.5
774,199 + BPHYT_RS23215 0.77 -0.3
774,209 - BPHYT_RS23215 0.78 -2.1
774,659 - +0.8
774,659 - -0.5
774,741 + BPHYT_RS23220 0.13 -0.8
775,111 - BPHYT_RS23220 0.63 -0.3
775,313 + -0.3

Or see this region's nucleotide sequence