Experiment: 24hr PHYTO8 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS20705 and BPHYT_RS20710 are separated by 2 nucleotides BPHYT_RS20710 and BPHYT_RS20715 are separated by 2 nucleotides BPHYT_RS20715 and BPHYT_RS20720 are separated by 419 nucleotides BPHYT_RS20720 and BPHYT_RS20725 are separated by 18 nucleotides
BPHYT_RS20705: BPHYT_RS20705 - Chase2 sensor protein, at 206,098 to 207,810
_RS20705
BPHYT_RS20710: BPHYT_RS20710 - hypothetical protein, at 207,813 to 208,193
_RS20710
BPHYT_RS20715: BPHYT_RS20715 - peptidase, at 208,196 to 209,902
_RS20715
BPHYT_RS20720: BPHYT_RS20720 - hypothetical protein, at 210,322 to 210,588
_RS20720
BPHYT_RS20725: BPHYT_RS20725 - histidine kinase, at 210,607 to 211,944
_RS20725
Position (kb) 208
209
210 Strain fitness (log2 ratio) -1
0
1 at 207.731 kb on + strand at 207.933 kb on + strand, within BPHYT_RS20710 at 207.934 kb on - strand, within BPHYT_RS20710 at 207.966 kb on + strand, within BPHYT_RS20710 at 208.242 kb on + strand at 209.370 kb on - strand, within BPHYT_RS20715 at 209.531 kb on - strand, within BPHYT_RS20715 at 210.439 kb on + strand, within BPHYT_RS20720 at 210.440 kb on - strand, within BPHYT_RS20720 at 210.574 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction 24hr PHYTO8 MOI 1 remove 207,731 + -0.4 207,933 + BPHYT_RS20710 0.31 -0.2 207,934 - BPHYT_RS20710 0.32 -0.6 207,966 + BPHYT_RS20710 0.40 -0.5 208,242 + +0.3 209,370 - BPHYT_RS20715 0.69 -0.1 209,531 - BPHYT_RS20715 0.78 -0.7 210,439 + BPHYT_RS20720 0.44 +0.1 210,440 - BPHYT_RS20720 0.44 -0.1 210,574 + +0.2
Or see this region's nucleotide sequence