Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS20440

Experiment: 24hr PHYTO8 MOI 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS20435 and BPHYT_RS20440 are separated by 238 nucleotidesBPHYT_RS20440 and BPHYT_RS20445 are separated by 15 nucleotides BPHYT_RS20435: BPHYT_RS20435 - MFS transporter, at 147,155 to 148,531 _RS20435 BPHYT_RS20440: BPHYT_RS20440 - IclR family transcriptional regulator, at 148,770 to 149,552 _RS20440 BPHYT_RS20445: BPHYT_RS20445 - NAD-dependent dehydratase, at 149,568 to 150,632 _RS20445 Position (kb) 148 149 150Strain fitness (log2 ratio) -1 0 1at 147.908 kb on - strand, within BPHYT_RS20435at 147.909 kb on + strand, within BPHYT_RS20435at 147.910 kb on - strand, within BPHYT_RS20435at 147.910 kb on - strand, within BPHYT_RS20435at 147.910 kb on - strand, within BPHYT_RS20435at 147.964 kb on - strand, within BPHYT_RS20435at 148.065 kb on + strand, within BPHYT_RS20435at 148.065 kb on + strand, within BPHYT_RS20435at 148.066 kb on - strand, within BPHYT_RS20435at 148.185 kb on - strand, within BPHYT_RS20435at 148.675 kb on - strandat 149.426 kb on + strand, within BPHYT_RS20440at 150.067 kb on + strand, within BPHYT_RS20445at 150.068 kb on - strand, within BPHYT_RS20445at 150.196 kb on + strand, within BPHYT_RS20445at 150.196 kb on + strand, within BPHYT_RS20445at 150.197 kb on - strand, within BPHYT_RS20445at 150.199 kb on + strand, within BPHYT_RS20445at 150.199 kb on + strand, within BPHYT_RS20445at 150.290 kb on - strand, within BPHYT_RS20445at 150.290 kb on - strand, within BPHYT_RS20445

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Per-strain Table

Position Strand Gene LocusTag Fraction 24hr PHYTO8 MOI 1
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147,908 - BPHYT_RS20435 0.55 -0.6
147,909 + BPHYT_RS20435 0.55 -1.3
147,910 - BPHYT_RS20435 0.55 -0.8
147,910 - BPHYT_RS20435 0.55 -0.8
147,910 - BPHYT_RS20435 0.55 +0.3
147,964 - BPHYT_RS20435 0.59 -0.9
148,065 + BPHYT_RS20435 0.66 -0.1
148,065 + BPHYT_RS20435 0.66 +0.1
148,066 - BPHYT_RS20435 0.66 +0.1
148,185 - BPHYT_RS20435 0.75 -0.9
148,675 - -0.0
149,426 + BPHYT_RS20440 0.84 -1.2
150,067 + BPHYT_RS20445 0.47 +0.4
150,068 - BPHYT_RS20445 0.47 +0.2
150,196 + BPHYT_RS20445 0.59 +0.3
150,196 + BPHYT_RS20445 0.59 -1.2
150,197 - BPHYT_RS20445 0.59 +1.0
150,199 + BPHYT_RS20445 0.59 -0.2
150,199 + BPHYT_RS20445 0.59 +0.8
150,290 - BPHYT_RS20445 0.68 -0.8
150,290 - BPHYT_RS20445 0.68 +0.1

Or see this region's nucleotide sequence