Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS19905

Experiment: 24hr PHYTO8 MOI 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS19895 and BPHYT_RS19900 are separated by 303 nucleotidesBPHYT_RS19900 and BPHYT_RS19905 are separated by 279 nucleotidesBPHYT_RS19905 and BPHYT_RS19910 are separated by 229 nucleotides BPHYT_RS19895: BPHYT_RS19895 - rod shape-determining protein RodA, at 6,831 to 7,265 _RS19895 BPHYT_RS19900: BPHYT_RS19900 - hypothetical protein, at 7,569 to 7,850 _RS19900 BPHYT_RS19905: BPHYT_RS19905 - membrane protein, at 8,130 to 9,530 _RS19905 BPHYT_RS19910: BPHYT_RS19910 - hypothetical protein, at 9,760 to 12,342 _RS19910 Position (kb) 8 9 10Strain fitness (log2 ratio) -2 -1 0 1 2 3at 7.653 kb on + strand, within BPHYT_RS19900at 8.493 kb on + strandat 9.128 kb on + strand, within BPHYT_RS19905at 9.517 kb on + strandat 9.517 kb on + strandat 9.534 kb on - strandat 10.352 kb on - strand, within BPHYT_RS19910

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Per-strain Table

Position Strand Gene LocusTag Fraction 24hr PHYTO8 MOI 1
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7,653 + BPHYT_RS19900 0.30 +3.0
8,493 + +2.2
9,128 + BPHYT_RS19905 0.71 -2.1
9,517 + -1.0
9,517 + -0.5
9,534 - +0.7
10,352 - BPHYT_RS19910 0.23 -1.0

Or see this region's nucleotide sequence