Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS14480

Experiment: 24hr PHYTO8 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	24hr PHYTO8 MOI 1
3,298,602	-		BPHYT_RS14470	0.35	+0.7
3,298,618	-		BPHYT_RS14470	0.39	+0.4
3,298,618	-		BPHYT_RS14470	0.39	+0.2
3,298,631	+		BPHYT_RS14470	0.42	+0.4
3,298,631	+		BPHYT_RS14470	0.42	-0.6
3,298,632	-		BPHYT_RS14470	0.43	-0.1
3,298,684	+		BPHYT_RS14470	0.56	+0.7
3,298,712	+		BPHYT_RS14470	0.62	-0.1
3,298,727	+		BPHYT_RS14470	0.66	-0.9
3,298,917	-				-1.3
3,298,957	+		BPHYT_RS14475	0.15	-0.7
3,298,957	+		BPHYT_RS14475	0.15	+1.8
3,298,958	-		BPHYT_RS14475	0.15	+0.0
3,298,958	-		BPHYT_RS14475	0.15	+0.9
3,298,958	-		BPHYT_RS14475	0.15	+1.7
3,299,207	-		BPHYT_RS14475	0.53	+0.7
3,299,380	+		BPHYT_RS14475	0.79	-0.8
3,299,380	+		BPHYT_RS14475	0.79	+0.3
3,299,381	-		BPHYT_RS14475	0.79	-0.2
3,299,513	+				-1.3
3,299,514	-				+0.9
3,299,514	-				-3.0
3,299,551	+				+1.2
3,299,552	-				+0.2
3,299,552	-				-1.4
3,299,709	+		BPHYT_RS14480	0.19	-0.0
3,299,710	-		BPHYT_RS14480	0.19	+0.5
3,299,710	-		BPHYT_RS14480	0.19	+0.6
3,299,825	+		BPHYT_RS14480	0.31	+0.3
3,299,826	-		BPHYT_RS14480	0.31	+0.8
3,299,826	-		BPHYT_RS14480	0.31	+0.4
3,299,826	-		BPHYT_RS14480	0.31	+0.8
3,299,826	-		BPHYT_RS14480	0.31	+0.9
3,299,919	-		BPHYT_RS14480	0.40	+1.4
3,299,919	-		BPHYT_RS14480	0.40	+0.6
3,299,990	+		BPHYT_RS14480	0.47	+2.1
3,299,990	+		BPHYT_RS14480	0.47	+1.1
3,299,990	+		BPHYT_RS14480	0.47	-0.0
3,299,991	-		BPHYT_RS14480	0.47	+0.5
3,299,991	-		BPHYT_RS14480	0.47	+0.9
3,299,991	-		BPHYT_RS14480	0.47	-0.4
3,299,991	-		BPHYT_RS14480	0.47	+0.7
3,300,201	+		BPHYT_RS14480	0.67	+1.4
3,300,235	-		BPHYT_RS14480	0.70	-2.4
3,300,339	-		BPHYT_RS14480	0.81	+0.1
3,300,400	-		BPHYT_RS14480	0.87	+0.1
3,300,400	-		BPHYT_RS14480	0.87	+0.4
3,300,400	-		BPHYT_RS14480	0.87	+1.6
3,300,518	-				+0.9
3,300,544	+				+2.3
3,301,179	+				+1.0
3,301,179	+				+1.3
3,301,179	+				+1.8