Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS11825

Experiment: 24hr PHYTO8 MOI 1

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBPHYT_RS11820 and BPHYT_RS11825 are separated by 45 nucleotidesBPHYT_RS11825 and BPHYT_RS11830 overlap by 4 nucleotides BPHYT_RS11820: BPHYT_RS11820 - amidohydrolase, at 2,680,008 to 2,681,459 _RS11820 BPHYT_RS11825: BPHYT_RS11825 - cytosine deaminase, at 2,681,505 to 2,682,710 _RS11825 BPHYT_RS11830: BPHYT_RS11830 - sodium:solute symporter, at 2,682,707 to 2,684,185 _RS11830 Position (kb) 2681 2682 2683Strain fitness (log2 ratio) -1 0 1at 2680.798 kb on + strand, within BPHYT_RS11820at 2680.799 kb on - strand, within BPHYT_RS11820at 2680.880 kb on - strand, within BPHYT_RS11820at 2680.880 kb on - strand, within BPHYT_RS11820at 2680.926 kb on - strand, within BPHYT_RS11820at 2682.144 kb on + strand, within BPHYT_RS11825at 2683.443 kb on + strand, within BPHYT_RS11830at 2683.479 kb on + strand, within BPHYT_RS11830at 2683.587 kb on + strand, within BPHYT_RS11830at 2683.588 kb on - strand, within BPHYT_RS11830

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 24hr PHYTO8 MOI 1
remove
2,680,798 + BPHYT_RS11820 0.54 -0.1
2,680,799 - BPHYT_RS11820 0.54 -0.1
2,680,880 - BPHYT_RS11820 0.60 -0.8
2,680,880 - BPHYT_RS11820 0.60 +0.3
2,680,926 - BPHYT_RS11820 0.63 -0.2
2,682,144 + BPHYT_RS11825 0.53 -1.1
2,683,443 + BPHYT_RS11830 0.50 +0.5
2,683,479 + BPHYT_RS11830 0.52 -0.7
2,683,587 + BPHYT_RS11830 0.59 -0.6
2,683,588 - BPHYT_RS11830 0.60 +0.3

Or see this region's nucleotide sequence