Experiment: 24hr PHYTO8 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS07630 and BPHYT_RS07635 are separated by 316 nucleotides BPHYT_RS07635 and BPHYT_RS07640 are separated by 56 nucleotides BPHYT_RS07640 and BPHYT_RS07645 are separated by 128 nucleotides
BPHYT_RS07630: BPHYT_RS07630 - alkane 1-monooxygenase, at 1,736,936 to 1,737,931
_RS07630
BPHYT_RS07635: BPHYT_RS07635 - alkanesulfonate monooxygenase, at 1,738,248 to 1,739,327
_RS07635
BPHYT_RS07640: BPHYT_RS07640 - hypothetical protein, at 1,739,384 to 1,740,163
_RS07640
BPHYT_RS07645: BPHYT_RS07645 - cysteine dioxygenase, at 1,740,292 to 1,740,900
_RS07645
Position (kb) 1738
1739
1740 Strain fitness (log2 ratio) -2
-1
0
1 at 1737.330 kb on + strand, within BPHYT_RS07630 at 1737.352 kb on + strand, within BPHYT_RS07630 at 1737.353 kb on - strand, within BPHYT_RS07630 at 1737.355 kb on - strand, within BPHYT_RS07630 at 1737.554 kb on - strand, within BPHYT_RS07630 at 1737.748 kb on - strand, within BPHYT_RS07630 at 1738.163 kb on - strand at 1738.163 kb on - strand at 1738.163 kb on - strand at 1738.380 kb on - strand, within BPHYT_RS07635 at 1738.555 kb on + strand, within BPHYT_RS07635 at 1738.556 kb on - strand, within BPHYT_RS07635 at 1739.196 kb on + strand, within BPHYT_RS07635 at 1739.196 kb on + strand, within BPHYT_RS07635 at 1739.197 kb on - strand, within BPHYT_RS07635 at 1739.820 kb on - strand, within BPHYT_RS07640 at 1739.979 kb on - strand, within BPHYT_RS07640
Per-strain Table
Position Strand Gene LocusTag Fraction 24hr PHYTO8 MOI 1 remove 1,737,330 + BPHYT_RS07630 0.40 -0.3 1,737,352 + BPHYT_RS07630 0.42 -0.7 1,737,353 - BPHYT_RS07630 0.42 +0.3 1,737,355 - BPHYT_RS07630 0.42 -1.9 1,737,554 - BPHYT_RS07630 0.62 -0.3 1,737,748 - BPHYT_RS07630 0.82 -0.4 1,738,163 - -1.0 1,738,163 - +0.9 1,738,163 - +1.1 1,738,380 - BPHYT_RS07635 0.12 +1.7 1,738,555 + BPHYT_RS07635 0.28 +0.4 1,738,556 - BPHYT_RS07635 0.29 +1.2 1,739,196 + BPHYT_RS07635 0.88 +1.4 1,739,196 + BPHYT_RS07635 0.88 -0.3 1,739,197 - BPHYT_RS07635 0.88 +1.3 1,739,820 - BPHYT_RS07640 0.56 -0.1 1,739,979 - BPHYT_RS07640 0.76 -1.4
Or see this region's nucleotide sequence