Experiment: 24hr PHYTO8 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS03865 and BPHYT_RS03870 are separated by 33 nucleotides BPHYT_RS03870 and BPHYT_RS03875 are separated by 69 nucleotides BPHYT_RS03875 and BPHYT_RS03880 are separated by 70 nucleotides
BPHYT_RS03865: BPHYT_RS03865 - FAD-binding molybdopterin dehydrogenase, at 875,700 to 877,223
_RS03865
BPHYT_RS03870: BPHYT_RS03870 - xanthine dehydrogenase, molybdopterin binding subunit (EC 1.17.1.4) <small>(from data)</small>, at 877,257 to 879,623
_RS03870
BPHYT_RS03875: BPHYT_RS03875 - dehydrogenase, at 879,693 to 880,259
_RS03875
BPHYT_RS03880: BPHYT_RS03880 - LysR family transcriptional regulator, at 880,330 to 881,310
_RS03880
Position (kb) 877
878
879
880 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 876.269 kb on + strand, within BPHYT_RS03865 at 876.269 kb on + strand, within BPHYT_RS03865 at 876.269 kb on + strand, within BPHYT_RS03865 at 876.633 kb on - strand, within BPHYT_RS03865 at 877.095 kb on + strand at 877.221 kb on + strand at 877.591 kb on - strand, within BPHYT_RS03870 at 877.591 kb on - strand, within BPHYT_RS03870 at 877.834 kb on - strand, within BPHYT_RS03870 at 877.891 kb on - strand, within BPHYT_RS03870 at 878.133 kb on + strand, within BPHYT_RS03870 at 878.139 kb on + strand, within BPHYT_RS03870 at 878.139 kb on + strand, within BPHYT_RS03870 at 878.140 kb on - strand, within BPHYT_RS03870 at 878.140 kb on - strand, within BPHYT_RS03870 at 878.140 kb on - strand, within BPHYT_RS03870 at 878.140 kb on - strand, within BPHYT_RS03870 at 878.377 kb on - strand, within BPHYT_RS03870 at 878.442 kb on + strand, within BPHYT_RS03870 at 878.459 kb on + strand, within BPHYT_RS03870 at 878.679 kb on + strand, within BPHYT_RS03870 at 878.680 kb on - strand, within BPHYT_RS03870 at 878.828 kb on + strand, within BPHYT_RS03870 at 878.828 kb on + strand, within BPHYT_RS03870 at 879.036 kb on + strand, within BPHYT_RS03870 at 879.037 kb on - strand, within BPHYT_RS03870 at 879.037 kb on - strand, within BPHYT_RS03870 at 879.091 kb on - strand, within BPHYT_RS03870 at 879.129 kb on + strand, within BPHYT_RS03870 at 879.130 kb on - strand, within BPHYT_RS03870 at 879.132 kb on + strand, within BPHYT_RS03870 at 879.132 kb on + strand, within BPHYT_RS03870 at 879.354 kb on + strand, within BPHYT_RS03870 at 879.355 kb on - strand, within BPHYT_RS03870 at 879.631 kb on + strand at 879.764 kb on + strand, within BPHYT_RS03875 at 879.765 kb on - strand, within BPHYT_RS03875 at 879.765 kb on - strand, within BPHYT_RS03875 at 879.765 kb on - strand, within BPHYT_RS03875 at 880.402 kb on - strand at 880.479 kb on - strand, within BPHYT_RS03880 at 880.542 kb on - strand, within BPHYT_RS03880
Per-strain Table
Position Strand Gene LocusTag Fraction 24hr PHYTO8 MOI 1 remove 876,269 + BPHYT_RS03865 0.37 +1.5 876,269 + BPHYT_RS03865 0.37 +1.2 876,269 + BPHYT_RS03865 0.37 -0.8 876,633 - BPHYT_RS03865 0.61 +0.2 877,095 + +0.1 877,221 + +0.2 877,591 - BPHYT_RS03870 0.14 +0.3 877,591 - BPHYT_RS03870 0.14 -0.4 877,834 - BPHYT_RS03870 0.24 -1.4 877,891 - BPHYT_RS03870 0.27 +0.2 878,133 + BPHYT_RS03870 0.37 +0.1 878,139 + BPHYT_RS03870 0.37 -0.1 878,139 + BPHYT_RS03870 0.37 -0.8 878,140 - BPHYT_RS03870 0.37 -0.8 878,140 - BPHYT_RS03870 0.37 +0.5 878,140 - BPHYT_RS03870 0.37 +0.6 878,140 - BPHYT_RS03870 0.37 -2.1 878,377 - BPHYT_RS03870 0.47 -0.9 878,442 + BPHYT_RS03870 0.50 +0.1 878,459 + BPHYT_RS03870 0.51 +1.6 878,679 + BPHYT_RS03870 0.60 -1.6 878,680 - BPHYT_RS03870 0.60 -0.3 878,828 + BPHYT_RS03870 0.66 +1.0 878,828 + BPHYT_RS03870 0.66 -0.4 879,036 + BPHYT_RS03870 0.75 -1.3 879,037 - BPHYT_RS03870 0.75 -0.4 879,037 - BPHYT_RS03870 0.75 +0.1 879,091 - BPHYT_RS03870 0.77 -1.7 879,129 + BPHYT_RS03870 0.79 +0.5 879,130 - BPHYT_RS03870 0.79 -1.3 879,132 + BPHYT_RS03870 0.79 -1.7 879,132 + BPHYT_RS03870 0.79 -0.3 879,354 + BPHYT_RS03870 0.89 -1.4 879,355 - BPHYT_RS03870 0.89 -1.8 879,631 + -0.4 879,764 + BPHYT_RS03875 0.13 -0.6 879,765 - BPHYT_RS03875 0.13 -2.0 879,765 - BPHYT_RS03875 0.13 +1.2 879,765 - BPHYT_RS03875 0.13 +0.6 880,402 - -3.1 880,479 - BPHYT_RS03880 0.15 -0.6 880,542 - BPHYT_RS03880 0.22 -0.1
Or see this region's nucleotide sequence