Experiment: 24hr PHYTO8 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS03705 and BPHYT_RS03710 are separated by 10 nucleotides BPHYT_RS03710 and BPHYT_RS03715 are separated by 155 nucleotides BPHYT_RS03715 and BPHYT_RS03720 are separated by 70 nucleotides
BPHYT_RS03705: BPHYT_RS03705 - biopolymer transporter ExbD, at 842,166 to 842,612
_RS03705
BPHYT_RS03710: BPHYT_RS03710 - protein tolQ, at 842,623 to 843,300
_RS03710
BPHYT_RS03715: BPHYT_RS03715 - 4-hydroxybenzoyl-CoA thioesterase, at 843,456 to 843,935
_RS03715
BPHYT_RS03720: BPHYT_RS03720 - malonic semialdehyde reductase, at 844,006 to 844,752
_RS03720
Position (kb) 843
844 Strain fitness (log2 ratio) -2
-1
0
1
2 at 843.426 kb on - strand at 843.675 kb on + strand, within BPHYT_RS03715 at 843.675 kb on + strand, within BPHYT_RS03715 at 843.675 kb on + strand, within BPHYT_RS03715 at 843.676 kb on - strand, within BPHYT_RS03715 at 843.676 kb on - strand, within BPHYT_RS03715 at 843.676 kb on - strand, within BPHYT_RS03715 at 843.676 kb on - strand, within BPHYT_RS03715 at 843.829 kb on + strand, within BPHYT_RS03715 at 843.862 kb on + strand, within BPHYT_RS03715 at 843.865 kb on + strand, within BPHYT_RS03715 at 843.865 kb on + strand, within BPHYT_RS03715 at 843.866 kb on - strand, within BPHYT_RS03715 at 843.887 kb on - strand, within BPHYT_RS03715 at 843.920 kb on + strand at 843.921 kb on - strand at 843.921 kb on - strand at 843.921 kb on - strand at 844.103 kb on + strand, within BPHYT_RS03720 at 844.103 kb on + strand, within BPHYT_RS03720 at 844.104 kb on - strand, within BPHYT_RS03720 at 844.104 kb on - strand, within BPHYT_RS03720 at 844.415 kb on - strand, within BPHYT_RS03720 at 844.602 kb on - strand, within BPHYT_RS03720 at 844.602 kb on - strand, within BPHYT_RS03720 at 844.903 kb on + strand at 844.903 kb on + strand at 844.903 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction 24hr PHYTO8 MOI 1 remove 843,426 - -0.6 843,675 + BPHYT_RS03715 0.46 -1.3 843,675 + BPHYT_RS03715 0.46 +0.4 843,675 + BPHYT_RS03715 0.46 +1.7 843,676 - BPHYT_RS03715 0.46 +0.3 843,676 - BPHYT_RS03715 0.46 +0.7 843,676 - BPHYT_RS03715 0.46 +0.8 843,676 - BPHYT_RS03715 0.46 +0.6 843,829 + BPHYT_RS03715 0.78 -1.0 843,862 + BPHYT_RS03715 0.85 +0.5 843,865 + BPHYT_RS03715 0.85 -1.4 843,865 + BPHYT_RS03715 0.85 -0.4 843,866 - BPHYT_RS03715 0.85 +0.7 843,887 - BPHYT_RS03715 0.90 -0.0 843,920 + +0.6 843,921 - -0.5 843,921 - -0.8 843,921 - -0.8 844,103 + BPHYT_RS03720 0.13 -2.6 844,103 + BPHYT_RS03720 0.13 +0.7 844,104 - BPHYT_RS03720 0.13 -0.7 844,104 - BPHYT_RS03720 0.13 -0.9 844,415 - BPHYT_RS03720 0.55 -0.8 844,602 - BPHYT_RS03720 0.80 -0.3 844,602 - BPHYT_RS03720 0.80 -1.8 844,903 + -0.3 844,903 + +2.0 844,903 + +1.4
Or see this region's nucleotide sequence