Experiment: 24hr PHYTO8 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS03670 and BPHYT_RS03675 are separated by 239 nucleotides
BPHYT_RS03670: BPHYT_RS03670 - peptidase U34, at 834,010 to 835,467
_RS03670
BPHYT_RS03675: BPHYT_RS03675 - porin, at 835,707 to 836,924
_RS03675
Position (kb) 835
836
837 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 834.878 kb on + strand, within BPHYT_RS03670 at 834.879 kb on - strand, within BPHYT_RS03670 at 834.936 kb on - strand, within BPHYT_RS03670 at 835.097 kb on + strand, within BPHYT_RS03670 at 835.129 kb on + strand, within BPHYT_RS03670 at 835.129 kb on + strand, within BPHYT_RS03670 at 835.130 kb on - strand, within BPHYT_RS03670 at 835.170 kb on + strand, within BPHYT_RS03670 at 835.170 kb on + strand, within BPHYT_RS03670 at 835.220 kb on + strand, within BPHYT_RS03670 at 835.221 kb on - strand, within BPHYT_RS03670 at 835.307 kb on + strand, within BPHYT_RS03670 at 835.418 kb on - strand at 835.927 kb on + strand, within BPHYT_RS03675 at 835.972 kb on + strand, within BPHYT_RS03675 at 835.973 kb on - strand, within BPHYT_RS03675 at 835.976 kb on + strand, within BPHYT_RS03675 at 835.977 kb on - strand, within BPHYT_RS03675 at 835.977 kb on - strand, within BPHYT_RS03675 at 835.978 kb on + strand, within BPHYT_RS03675 at 836.083 kb on + strand, within BPHYT_RS03675 at 836.084 kb on - strand, within BPHYT_RS03675 at 836.084 kb on - strand, within BPHYT_RS03675 at 836.098 kb on + strand, within BPHYT_RS03675 at 836.108 kb on + strand, within BPHYT_RS03675 at 836.132 kb on + strand, within BPHYT_RS03675 at 836.132 kb on + strand, within BPHYT_RS03675 at 836.132 kb on + strand, within BPHYT_RS03675 at 836.132 kb on + strand, within BPHYT_RS03675 at 836.132 kb on + strand, within BPHYT_RS03675 at 836.132 kb on + strand, within BPHYT_RS03675 at 836.133 kb on - strand, within BPHYT_RS03675 at 836.133 kb on - strand, within BPHYT_RS03675 at 836.133 kb on - strand, within BPHYT_RS03675 at 836.135 kb on - strand, within BPHYT_RS03675 at 836.350 kb on + strand at 836.421 kb on - strand, within BPHYT_RS03675 at 836.447 kb on - strand, within BPHYT_RS03675 at 836.540 kb on - strand, within BPHYT_RS03675 at 836.582 kb on + strand, within BPHYT_RS03675 at 836.670 kb on + strand, within BPHYT_RS03675 at 836.834 kb on - strand at 836.913 kb on + strand at 837.079 kb on + strand at 837.105 kb on + strand at 837.453 kb on + strand at 837.453 kb on + strand at 837.454 kb on - strand at 837.565 kb on + strand at 837.617 kb on - strand at 837.739 kb on + strand at 837.739 kb on + strand at 837.740 kb on - strand at 837.743 kb on + strand at 837.916 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 24hr PHYTO8 MOI 1 remove 834,878 + BPHYT_RS03670 0.60 +0.0 834,879 - BPHYT_RS03670 0.60 -1.6 834,936 - BPHYT_RS03670 0.64 -0.3 835,097 + BPHYT_RS03670 0.75 -0.9 835,129 + BPHYT_RS03670 0.77 +0.5 835,129 + BPHYT_RS03670 0.77 +0.6 835,130 - BPHYT_RS03670 0.77 +0.1 835,170 + BPHYT_RS03670 0.80 -0.7 835,170 + BPHYT_RS03670 0.80 +0.2 835,220 + BPHYT_RS03670 0.83 -0.6 835,221 - BPHYT_RS03670 0.83 -0.1 835,307 + BPHYT_RS03670 0.89 +0.0 835,418 - +0.2 835,927 + BPHYT_RS03675 0.18 +1.1 835,972 + BPHYT_RS03675 0.22 +0.9 835,973 - BPHYT_RS03675 0.22 +0.2 835,976 + BPHYT_RS03675 0.22 -1.3 835,977 - BPHYT_RS03675 0.22 -1.1 835,977 - BPHYT_RS03675 0.22 -1.5 835,978 + BPHYT_RS03675 0.22 +0.3 836,083 + BPHYT_RS03675 0.31 -1.7 836,084 - BPHYT_RS03675 0.31 -0.2 836,084 - BPHYT_RS03675 0.31 -1.6 836,098 + BPHYT_RS03675 0.32 -1.9 836,108 + BPHYT_RS03675 0.33 -0.6 836,132 + BPHYT_RS03675 0.35 -0.6 836,132 + BPHYT_RS03675 0.35 +0.1 836,132 + BPHYT_RS03675 0.35 +0.8 836,132 + BPHYT_RS03675 0.35 -0.4 836,132 + BPHYT_RS03675 0.35 -0.1 836,132 + BPHYT_RS03675 0.35 +0.6 836,133 - BPHYT_RS03675 0.35 +0.2 836,133 - BPHYT_RS03675 0.35 -1.4 836,133 - BPHYT_RS03675 0.35 -0.6 836,135 - BPHYT_RS03675 0.35 -0.6 836,350 + +0.3 836,421 - BPHYT_RS03675 0.59 +1.8 836,447 - BPHYT_RS03675 0.61 -2.4 836,540 - BPHYT_RS03675 0.68 +0.6 836,582 + BPHYT_RS03675 0.72 +0.1 836,670 + BPHYT_RS03675 0.79 -1.2 836,834 - +0.8 836,913 + -1.7 837,079 + -0.8 837,105 + +3.4 837,453 + +1.5 837,453 + +0.6 837,454 - -1.1 837,565 + -2.4 837,617 - -0.0 837,739 + -1.2 837,739 + -0.3 837,740 - -0.1 837,743 + -0.3 837,916 - -0.8
Or see this region's nucleotide sequence