Experiment: 24hr PHYTO8 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS03665 and BPHYT_RS03670 are separated by 490 nucleotides BPHYT_RS03670 and BPHYT_RS03675 are separated by 239 nucleotides
BPHYT_RS03665: BPHYT_RS03665 - hypothetical protein, at 833,154 to 833,519
_RS03665
BPHYT_RS03670: BPHYT_RS03670 - peptidase U34, at 834,010 to 835,467
_RS03670
BPHYT_RS03675: BPHYT_RS03675 - porin, at 835,707 to 836,924
_RS03675
Position (kb) 834
835
836 Strain fitness (log2 ratio) -2
-1
0
1
2 at 833.040 kb on - strand at 833.324 kb on - strand, within BPHYT_RS03665 at 833.349 kb on + strand, within BPHYT_RS03665 at 833.350 kb on - strand, within BPHYT_RS03665 at 833.350 kb on - strand, within BPHYT_RS03665 at 833.405 kb on + strand, within BPHYT_RS03665 at 833.406 kb on - strand, within BPHYT_RS03665 at 833.519 kb on + strand at 833.519 kb on + strand at 833.520 kb on - strand at 833.520 kb on - strand at 833.624 kb on - strand at 833.757 kb on + strand at 833.758 kb on - strand at 833.775 kb on - strand at 833.812 kb on - strand at 833.812 kb on - strand at 834.008 kb on - strand at 834.012 kb on - strand at 834.135 kb on + strand at 834.177 kb on - strand, within BPHYT_RS03670 at 834.416 kb on + strand, within BPHYT_RS03670 at 834.417 kb on - strand, within BPHYT_RS03670 at 834.460 kb on + strand, within BPHYT_RS03670 at 834.460 kb on + strand, within BPHYT_RS03670 at 834.461 kb on - strand, within BPHYT_RS03670 at 834.477 kb on - strand, within BPHYT_RS03670 at 834.486 kb on - strand, within BPHYT_RS03670 at 834.530 kb on + strand, within BPHYT_RS03670 at 834.558 kb on - strand, within BPHYT_RS03670 at 834.695 kb on + strand, within BPHYT_RS03670 at 834.701 kb on + strand, within BPHYT_RS03670 at 834.878 kb on + strand, within BPHYT_RS03670 at 834.879 kb on - strand, within BPHYT_RS03670 at 834.936 kb on - strand, within BPHYT_RS03670 at 835.097 kb on + strand, within BPHYT_RS03670 at 835.129 kb on + strand, within BPHYT_RS03670 at 835.129 kb on + strand, within BPHYT_RS03670 at 835.130 kb on - strand, within BPHYT_RS03670 at 835.170 kb on + strand, within BPHYT_RS03670 at 835.170 kb on + strand, within BPHYT_RS03670 at 835.220 kb on + strand, within BPHYT_RS03670 at 835.221 kb on - strand, within BPHYT_RS03670 at 835.307 kb on + strand, within BPHYT_RS03670 at 835.418 kb on - strand at 835.927 kb on + strand, within BPHYT_RS03675 at 835.972 kb on + strand, within BPHYT_RS03675 at 835.973 kb on - strand, within BPHYT_RS03675 at 835.976 kb on + strand, within BPHYT_RS03675 at 835.977 kb on - strand, within BPHYT_RS03675 at 835.977 kb on - strand, within BPHYT_RS03675 at 835.978 kb on + strand, within BPHYT_RS03675 at 836.083 kb on + strand, within BPHYT_RS03675 at 836.084 kb on - strand, within BPHYT_RS03675 at 836.084 kb on - strand, within BPHYT_RS03675 at 836.098 kb on + strand, within BPHYT_RS03675 at 836.108 kb on + strand, within BPHYT_RS03675 at 836.132 kb on + strand, within BPHYT_RS03675 at 836.132 kb on + strand, within BPHYT_RS03675 at 836.132 kb on + strand, within BPHYT_RS03675 at 836.132 kb on + strand, within BPHYT_RS03675 at 836.132 kb on + strand, within BPHYT_RS03675 at 836.132 kb on + strand, within BPHYT_RS03675 at 836.133 kb on - strand, within BPHYT_RS03675 at 836.133 kb on - strand, within BPHYT_RS03675 at 836.133 kb on - strand, within BPHYT_RS03675 at 836.135 kb on - strand, within BPHYT_RS03675 at 836.350 kb on + strand at 836.421 kb on - strand, within BPHYT_RS03675 at 836.447 kb on - strand, within BPHYT_RS03675
Per-strain Table
Position Strand Gene LocusTag Fraction 24hr PHYTO8 MOI 1 remove 833,040 - -0.6 833,324 - BPHYT_RS03665 0.46 +0.4 833,349 + BPHYT_RS03665 0.53 +0.7 833,350 - BPHYT_RS03665 0.54 +2.6 833,350 - BPHYT_RS03665 0.54 +2.2 833,405 + BPHYT_RS03665 0.69 -0.0 833,406 - BPHYT_RS03665 0.69 -1.0 833,519 + +0.2 833,519 + +0.1 833,520 - -0.1 833,520 - +0.9 833,624 - +0.0 833,757 + -0.0 833,758 - +0.4 833,775 - -0.1 833,812 - +0.0 833,812 - -0.2 834,008 - -1.2 834,012 - -1.3 834,135 + -2.0 834,177 - BPHYT_RS03670 0.11 +0.6 834,416 + BPHYT_RS03670 0.28 -1.3 834,417 - BPHYT_RS03670 0.28 -2.1 834,460 + BPHYT_RS03670 0.31 -0.4 834,460 + BPHYT_RS03670 0.31 -0.3 834,461 - BPHYT_RS03670 0.31 -0.3 834,477 - BPHYT_RS03670 0.32 +0.0 834,486 - BPHYT_RS03670 0.33 -1.0 834,530 + BPHYT_RS03670 0.36 -0.8 834,558 - BPHYT_RS03670 0.38 +1.5 834,695 + BPHYT_RS03670 0.47 -0.0 834,701 + BPHYT_RS03670 0.47 -0.1 834,878 + BPHYT_RS03670 0.60 +0.0 834,879 - BPHYT_RS03670 0.60 -1.6 834,936 - BPHYT_RS03670 0.64 -0.3 835,097 + BPHYT_RS03670 0.75 -0.9 835,129 + BPHYT_RS03670 0.77 +0.5 835,129 + BPHYT_RS03670 0.77 +0.6 835,130 - BPHYT_RS03670 0.77 +0.1 835,170 + BPHYT_RS03670 0.80 -0.7 835,170 + BPHYT_RS03670 0.80 +0.2 835,220 + BPHYT_RS03670 0.83 -0.6 835,221 - BPHYT_RS03670 0.83 -0.1 835,307 + BPHYT_RS03670 0.89 +0.0 835,418 - +0.2 835,927 + BPHYT_RS03675 0.18 +1.1 835,972 + BPHYT_RS03675 0.22 +0.9 835,973 - BPHYT_RS03675 0.22 +0.2 835,976 + BPHYT_RS03675 0.22 -1.3 835,977 - BPHYT_RS03675 0.22 -1.1 835,977 - BPHYT_RS03675 0.22 -1.5 835,978 + BPHYT_RS03675 0.22 +0.3 836,083 + BPHYT_RS03675 0.31 -1.7 836,084 - BPHYT_RS03675 0.31 -0.2 836,084 - BPHYT_RS03675 0.31 -1.6 836,098 + BPHYT_RS03675 0.32 -1.9 836,108 + BPHYT_RS03675 0.33 -0.6 836,132 + BPHYT_RS03675 0.35 -0.6 836,132 + BPHYT_RS03675 0.35 +0.1 836,132 + BPHYT_RS03675 0.35 +0.8 836,132 + BPHYT_RS03675 0.35 -0.4 836,132 + BPHYT_RS03675 0.35 -0.1 836,132 + BPHYT_RS03675 0.35 +0.6 836,133 - BPHYT_RS03675 0.35 +0.2 836,133 - BPHYT_RS03675 0.35 -1.4 836,133 - BPHYT_RS03675 0.35 -0.6 836,135 - BPHYT_RS03675 0.35 -0.6 836,350 + +0.3 836,421 - BPHYT_RS03675 0.59 +1.8 836,447 - BPHYT_RS03675 0.61 -2.4
Or see this region's nucleotide sequence