Experiment: 24hr PHYTO8 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS00135 and BPHYT_RS00140 are separated by 49 nucleotides BPHYT_RS00140 and BPHYT_RS00145 are separated by 114 nucleotides BPHYT_RS00145 and BPHYT_RS00150 are separated by 43 nucleotides BPHYT_RS00150 and BPHYT_RS00155 are separated by 302 nucleotides
BPHYT_RS00135: BPHYT_RS00135 - hypothetical protein, at 39,233 to 39,436
_RS00135
BPHYT_RS00140: BPHYT_RS00140 - MerR family transcriptional regulator, at 39,486 to 39,917
_RS00140
BPHYT_RS00145: BPHYT_RS00145 - hypothetical protein, at 40,032 to 40,232
_RS00145
BPHYT_RS00150: BPHYT_RS00150 - DEAD/DEAH box helicase, at 40,276 to 41,679
_RS00150
BPHYT_RS00155: BPHYT_RS00155 - aminotransferase, at 41,982 to 43,136
_RS00155
Position (kb) 40
41
42 Strain fitness (log2 ratio) -1
0
1
2
3
4 at 39.455 kb on + strand at 39.455 kb on + strand at 39.455 kb on + strand at 39.456 kb on - strand at 39.543 kb on + strand, within BPHYT_RS00140 at 39.592 kb on - strand, within BPHYT_RS00140 at 39.638 kb on + strand, within BPHYT_RS00140 at 39.638 kb on + strand, within BPHYT_RS00140 at 39.638 kb on + strand, within BPHYT_RS00140 at 39.902 kb on + strand at 39.903 kb on - strand at 40.038 kb on - strand at 40.038 kb on - strand at 40.043 kb on + strand at 40.044 kb on - strand at 40.044 kb on - strand at 40.147 kb on - strand, within BPHYT_RS00145 at 40.186 kb on - strand, within BPHYT_RS00145 at 40.244 kb on - strand at 40.276 kb on - strand at 40.276 kb on - strand at 40.308 kb on + strand at 40.853 kb on - strand, within BPHYT_RS00150 at 40.954 kb on + strand, within BPHYT_RS00150 at 40.961 kb on + strand, within BPHYT_RS00150 at 41.287 kb on - strand, within BPHYT_RS00150 at 41.575 kb on + strand at 41.576 kb on - strand at 41.576 kb on - strand at 41.576 kb on - strand at 41.576 kb on - strand at 41.733 kb on - strand at 41.740 kb on - strand at 41.902 kb on - strand at 41.975 kb on + strand at 41.981 kb on + strand at 41.982 kb on - strand at 42.022 kb on + strand at 42.228 kb on + strand, within BPHYT_RS00155 at 42.291 kb on + strand, within BPHYT_RS00155 at 42.337 kb on - strand, within BPHYT_RS00155 at 42.337 kb on - strand, within BPHYT_RS00155 at 42.360 kb on + strand, within BPHYT_RS00155 at 42.361 kb on - strand, within BPHYT_RS00155 at 42.591 kb on + strand, within BPHYT_RS00155
Per-strain Table
Position Strand Gene LocusTag Fraction 24hr PHYTO8 MOI 1 remove 39,455 + +1.0 39,455 + +0.4 39,455 + +0.5 39,456 - +0.7 39,543 + BPHYT_RS00140 0.13 -1.0 39,592 - BPHYT_RS00140 0.25 -0.5 39,638 + BPHYT_RS00140 0.35 -0.4 39,638 + BPHYT_RS00140 0.35 -0.3 39,638 + BPHYT_RS00140 0.35 -0.4 39,902 + -0.8 39,903 - +0.2 40,038 - -0.6 40,038 - +1.0 40,043 + +1.2 40,044 - +0.3 40,044 - -0.6 40,147 - BPHYT_RS00145 0.57 -1.6 40,186 - BPHYT_RS00145 0.77 -0.5 40,244 - -0.2 40,276 - -0.4 40,276 - -1.1 40,308 + -0.3 40,853 - BPHYT_RS00150 0.41 +0.2 40,954 + BPHYT_RS00150 0.48 +0.5 40,961 + BPHYT_RS00150 0.49 +1.3 41,287 - BPHYT_RS00150 0.72 -0.0 41,575 + +0.8 41,576 - -1.6 41,576 - -0.7 41,576 - -0.6 41,576 - -0.6 41,733 - -0.8 41,740 - -0.4 41,902 - +1.9 41,975 + -0.3 41,981 + +0.6 41,982 - -0.2 42,022 + -1.0 42,228 + BPHYT_RS00155 0.21 +0.6 42,291 + BPHYT_RS00155 0.27 +3.8 42,337 - BPHYT_RS00155 0.31 -0.1 42,337 - BPHYT_RS00155 0.31 +0.4 42,360 + BPHYT_RS00155 0.33 +1.4 42,361 - BPHYT_RS00155 0.33 -0.3 42,591 + BPHYT_RS00155 0.53 +0.4
Or see this region's nucleotide sequence