Experiment: 24hr PHYTO7 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS36235 and BPHYT_RS36240 are separated by 48 nucleotides BPHYT_RS36240 and BPHYT_RS36245 are separated by 18 nucleotides BPHYT_RS36245 and BPHYT_RS36250 are separated by 159 nucleotides BPHYT_RS36250 and BPHYT_RS36255 are separated by 168 nucleotides
BPHYT_RS36235: BPHYT_RS36235 - hypothetical protein, at 60,480 to 60,860
_RS36235
BPHYT_RS36240: BPHYT_RS36240 - hypothetical protein, at 60,909 to 61,121
_RS36240
BPHYT_RS36245: BPHYT_RS36245 - hypothetical protein, at 61,140 to 61,418
_RS36245
BPHYT_RS36250: BPHYT_RS36250 - hypothetical protein, at 61,578 to 61,940
_RS36250
BPHYT_RS36255: BPHYT_RS36255 - hypothetical protein, at 62,109 to 62,321
_RS36255
Position (kb) 61
62 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 60.479 kb on + strand at 60.570 kb on - strand, within BPHYT_RS36235 at 60.908 kb on + strand at 60.948 kb on - strand, within BPHYT_RS36240 at 60.994 kb on + strand, within BPHYT_RS36240 at 60.995 kb on - strand, within BPHYT_RS36240 at 61.203 kb on + strand, within BPHYT_RS36245 at 61.224 kb on + strand, within BPHYT_RS36245 at 61.225 kb on - strand, within BPHYT_RS36245 at 61.375 kb on + strand, within BPHYT_RS36245 at 61.376 kb on - strand, within BPHYT_RS36245 at 61.488 kb on + strand at 61.543 kb on - strand at 61.543 kb on - strand at 61.701 kb on + strand, within BPHYT_RS36250 at 61.781 kb on - strand, within BPHYT_RS36250 at 61.907 kb on + strand at 61.938 kb on + strand at 62.044 kb on + strand at 62.045 kb on - strand at 62.127 kb on + strand at 62.127 kb on + strand at 62.127 kb on + strand at 62.239 kb on - strand, within BPHYT_RS36255
Per-strain Table
Position Strand Gene LocusTag Fraction 24hr PHYTO7 MOI 1 remove 60,479 + -1.8 60,570 - BPHYT_RS36235 0.24 +1.6 60,908 + +0.6 60,948 - BPHYT_RS36240 0.18 +0.0 60,994 + BPHYT_RS36240 0.40 +1.6 60,995 - BPHYT_RS36240 0.40 -0.7 61,203 + BPHYT_RS36245 0.23 -2.4 61,224 + BPHYT_RS36245 0.30 -0.8 61,225 - BPHYT_RS36245 0.30 -0.6 61,375 + BPHYT_RS36245 0.84 -1.7 61,376 - BPHYT_RS36245 0.85 -2.1 61,488 + -0.0 61,543 - -1.0 61,543 - -0.4 61,701 + BPHYT_RS36250 0.34 +0.7 61,781 - BPHYT_RS36250 0.56 +0.2 61,907 + -0.0 61,938 + +0.1 62,044 + +0.6 62,045 - -0.4 62,127 + +3.2 62,127 + +0.1 62,127 + +1.6 62,239 - BPHYT_RS36255 0.61 +2.2
Or see this region's nucleotide sequence