Experiment: 24hr PHYTO7 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS36140 and BPHYT_RS36145 are separated by 398 nucleotides BPHYT_RS36145 and BPHYT_RS36150 are separated by 514 nucleotides BPHYT_RS36150 and BPHYT_RS36155 are separated by 5 nucleotides
BPHYT_RS36140: BPHYT_RS36140 - hypothetical protein, at 45,804 to 46,325
_RS36140
BPHYT_RS36145: BPHYT_RS36145 - hypothetical protein, at 46,724 to 46,978
_RS36145
BPHYT_RS36150: BPHYT_RS36150 - hypothetical protein, at 47,493 to 47,726
_RS36150
BPHYT_RS36155: BPHYT_RS36155 - hypothetical protein, at 47,732 to 47,947
_RS36155
Position (kb) 46
47 Strain fitness (log2 ratio) -1
0
1
2 at 45.778 kb on - strand at 45.909 kb on - strand, within BPHYT_RS36140 at 46.222 kb on + strand, within BPHYT_RS36140 at 46.443 kb on + strand at 46.444 kb on - strand at 46.448 kb on - strand at 46.448 kb on - strand at 46.793 kb on + strand, within BPHYT_RS36145 at 47.023 kb on + strand at 47.024 kb on - strand at 47.179 kb on + strand at 47.179 kb on + strand at 47.180 kb on - strand at 47.533 kb on + strand, within BPHYT_RS36150 at 47.660 kb on + strand, within BPHYT_RS36150 at 47.950 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 24hr PHYTO7 MOI 1 remove 45,778 - +2.0 45,909 - BPHYT_RS36140 0.20 +0.5 46,222 + BPHYT_RS36140 0.80 +0.0 46,443 + -0.1 46,444 - +1.2 46,448 - +0.5 46,448 - +0.7 46,793 + BPHYT_RS36145 0.27 -1.1 47,023 + +1.4 47,024 - +2.5 47,179 + +0.1 47,179 + -0.4 47,180 - +0.1 47,533 + BPHYT_RS36150 0.17 -0.8 47,660 + BPHYT_RS36150 0.71 +0.9 47,950 - -0.8
Or see this region's nucleotide sequence