Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS35615

Experiment: 24hr PHYTO7 MOI 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS35610 and BPHYT_RS35615 are separated by 30 nucleotidesBPHYT_RS35615 and BPHYT_RS35620 are separated by 136 nucleotidesBPHYT_RS35620 and BPHYT_RS35625 are separated by 386 nucleotides BPHYT_RS35610: BPHYT_RS35610 - diguanylate cyclase, at 3,582,304 to 3,584,238 _RS35610 BPHYT_RS35615: BPHYT_RS35615 - hypothetical protein, at 3,584,269 to 3,584,688 _RS35615 BPHYT_RS35620: BPHYT_RS35620 - hypothetical protein, at 3,584,825 to 3,585,049 _RS35620 BPHYT_RS35625: BPHYT_RS35625 - ser/threonine protein phosphatase, at 3,585,436 to 3,587,127 _RS35625 Position (kb) 3584 3585Strain fitness (log2 ratio) -2 -1 0 1at 3583.736 kb on + strand, within BPHYT_RS35610at 3583.899 kb on - strand, within BPHYT_RS35610at 3584.139 kb on + strandat 3584.140 kb on - strandat 3584.301 kb on + strandat 3584.432 kb on + strand, within BPHYT_RS35615at 3584.433 kb on - strand, within BPHYT_RS35615at 3585.421 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 24hr PHYTO7 MOI 1
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3,583,736 + BPHYT_RS35610 0.74 -0.1
3,583,899 - BPHYT_RS35610 0.82 -0.4
3,584,139 + +0.4
3,584,140 - -0.9
3,584,301 + +0.1
3,584,432 + BPHYT_RS35615 0.39 -0.8
3,584,433 - BPHYT_RS35615 0.39 -2.2
3,585,421 - +0.9

Or see this region's nucleotide sequence