Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS33490

Experiment: 24hr PHYTO7 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	24hr PHYTO7 MOI 1
3,097,927	+				-1.2
3,097,947	+				-0.0
3,097,948	-				+0.6
3,097,948	-				-0.4
3,097,948	-				-0.9
3,097,948	-				-0.4
3,097,957	+		BPHYT_RS33485	0.11	+0.3
3,097,957	+		BPHYT_RS33485	0.11	-1.5
3,097,958	-		BPHYT_RS33485	0.11	-0.3
3,097,967	-		BPHYT_RS33485	0.15	+0.0
3,097,967	-		BPHYT_RS33485	0.15	-0.2
3,098,072	-		BPHYT_RS33485	0.62	+0.0
3,098,235	+				-1.9
3,098,236	-				-1.1
3,098,236	-				-0.2
3,098,271	-				-1.0
3,098,387	-				+0.2
3,098,514	+		BPHYT_RS33490	0.14	+1.1
3,098,515	-		BPHYT_RS33490	0.14	+0.7
3,098,515	-		BPHYT_RS33490	0.14	+0.4
3,098,536	+		BPHYT_RS33490	0.16	+0.6
3,098,536	+		BPHYT_RS33490	0.16	-0.9
3,098,707	+		BPHYT_RS33490	0.26	+0.2
3,098,821	+		BPHYT_RS33490	0.33	+0.4
3,098,915	-		BPHYT_RS33490	0.39	+0.4
3,099,235	+		BPHYT_RS33490	0.59	+0.3
3,099,235	+		BPHYT_RS33490	0.59	+0.3
3,099,236	-		BPHYT_RS33490	0.59	+1.0
3,099,270	-		BPHYT_RS33490	0.61	-0.2
3,099,290	-		BPHYT_RS33490	0.62	-3.2
3,099,308	-		BPHYT_RS33490	0.63	+0.4
3,099,308	-		BPHYT_RS33490	0.63	+1.1
3,099,346	+		BPHYT_RS33490	0.65	+1.1
3,099,347	-		BPHYT_RS33490	0.65	+0.4
3,099,347	-		BPHYT_RS33490	0.65	-0.5
3,099,347	-		BPHYT_RS33490	0.65	-0.0
3,099,427	+		BPHYT_RS33490	0.70	-0.0
3,099,428	-				+1.5
3,099,428	-		BPHYT_RS33490	0.70	+0.8
3,099,612	-		BPHYT_RS33490	0.82	+0.6
3,099,663	+		BPHYT_RS33490	0.85	+0.1
3,099,677	+		BPHYT_RS33490	0.86	-0.5
3,099,677	+		BPHYT_RS33490	0.86	-0.3
3,099,760	+				-0.4
3,099,817	+				-0.6
3,099,818	-				-0.1
3,099,865	+				-0.3
3,099,865	+				-1.0
3,099,865	+				-0.7
3,099,865	+				-0.3
3,099,865	+				+0.4
3,099,865	+				-0.4
3,099,866	-				+1.4
3,099,866	-				-1.0
3,099,964	+				-2.3
3,099,965	-				-0.1
3,099,965	-				+0.3
3,099,969	+				-0.6
3,100,315	+		BPHYT_RS33495	0.33	+0.3
3,100,315	+		BPHYT_RS33495	0.33	-0.6
3,100,315	+		BPHYT_RS33495	0.33	-0.1
3,100,315	+		BPHYT_RS33495	0.33	-0.6
3,100,315	+		BPHYT_RS33495	0.33	-0.4
3,100,315	+		BPHYT_RS33495	0.33	+0.6
3,100,315	+		BPHYT_RS33495	0.33	-0.5
3,100,316	-		BPHYT_RS33495	0.33	+0.1
3,100,316	-		BPHYT_RS33495	0.33	+0.5
3,100,316	-		BPHYT_RS33495	0.33	+0.3
3,100,316	-		BPHYT_RS33495	0.33	-0.3
3,100,316	-		BPHYT_RS33495	0.33	-2.1
3,100,385	+		BPHYT_RS33495	0.43	-0.3
3,100,385	+		BPHYT_RS33495	0.43	-1.3
3,100,458	+		BPHYT_RS33495	0.52	-0.2
3,100,459	-		BPHYT_RS33495	0.53	-1.0
3,100,608	-		BPHYT_RS33495	0.73	-0.4
3,100,608	-		BPHYT_RS33495	0.73	-0.2
3,100,750	+				+0.3
3,100,751	-				+1.4
3,100,810	+				+0.3
3,100,810	+				+0.1
3,100,810	+				-0.2
3,100,811	-				+0.4
3,100,811	-				-1.0