Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS27860

Experiment: 24hr PHYTO7 MOI 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS27855 and BPHYT_RS27860 are separated by 427 nucleotidesBPHYT_RS27860 and BPHYT_RS27865 are separated by 40 nucleotides BPHYT_RS27855: BPHYT_RS27855 - hypothetical protein, at 1,812,595 to 1,812,813 _RS27855 BPHYT_RS27860: BPHYT_RS27860 - membrane protein, at 1,813,241 to 1,813,855 _RS27860 BPHYT_RS27865: BPHYT_RS27865 - ATPase, at 1,813,896 to 1,816,406 _RS27865 Position (kb) 1813 1814Strain fitness (log2 ratio) -1 0 1at 1812.622 kb on + strand, within BPHYT_RS27855at 1812.622 kb on + strand, within BPHYT_RS27855at 1812.706 kb on - strand, within BPHYT_RS27855at 1812.819 kb on + strandat 1812.847 kb on + strandat 1812.865 kb on - strandat 1812.909 kb on + strandat 1813.079 kb on + strandat 1813.298 kb on - strandat 1813.537 kb on - strand, within BPHYT_RS27860at 1814.076 kb on - strandat 1814.118 kb on - strandat 1814.447 kb on + strand, within BPHYT_RS27865at 1814.448 kb on - strand, within BPHYT_RS27865

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Per-strain Table

Position Strand Gene LocusTag Fraction 24hr PHYTO7 MOI 1
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1,812,622 + BPHYT_RS27855 0.12 -0.0
1,812,622 + BPHYT_RS27855 0.12 -0.8
1,812,706 - BPHYT_RS27855 0.51 -0.3
1,812,819 + +0.2
1,812,847 + +0.3
1,812,865 - +0.3
1,812,909 + +0.7
1,813,079 + -0.3
1,813,298 - +0.0
1,813,537 - BPHYT_RS27860 0.48 -1.1
1,814,076 - +1.0
1,814,118 - -0.3
1,814,447 + BPHYT_RS27865 0.22 -0.6
1,814,448 - BPHYT_RS27865 0.22 -0.6

Or see this region's nucleotide sequence