Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS26900

Experiment: 24hr PHYTO7 MOI 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS26895 and BPHYT_RS26900 are separated by 82 nucleotidesBPHYT_RS26900 and BPHYT_RS26905 are separated by 214 nucleotides BPHYT_RS26895: BPHYT_RS26895 - nicotinate phosphoribosyltransferase, at 1,606,296 to 1,607,723 _RS26895 BPHYT_RS26900: BPHYT_RS26900 - isoprenylcysteine carboxyl methyltransferase, at 1,607,806 to 1,608,492 _RS26900 BPHYT_RS26905: BPHYT_RS26905 - pilus assembly protein CpaE, at 1,608,707 to 1,609,909 _RS26905 Position (kb) 1607 1608 1609Strain fitness (log2 ratio) -1 0 1at 1606.912 kb on - strand, within BPHYT_RS26895at 1607.054 kb on - strand, within BPHYT_RS26895at 1607.054 kb on - strand, within BPHYT_RS26895at 1607.411 kb on - strand, within BPHYT_RS26895at 1607.597 kb on - strandat 1607.931 kb on - strand, within BPHYT_RS26900at 1608.350 kb on + strand, within BPHYT_RS26900at 1608.370 kb on - strand, within BPHYT_RS26900

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Per-strain Table

Position Strand Gene LocusTag Fraction 24hr PHYTO7 MOI 1
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1,606,912 - BPHYT_RS26895 0.43 +0.5
1,607,054 - BPHYT_RS26895 0.53 +0.9
1,607,054 - BPHYT_RS26895 0.53 -0.3
1,607,411 - BPHYT_RS26895 0.78 +0.3
1,607,597 - -0.8
1,607,931 - BPHYT_RS26900 0.18 -1.6
1,608,350 + BPHYT_RS26900 0.79 -1.2
1,608,370 - BPHYT_RS26900 0.82 -1.2

Or see this region's nucleotide sequence