Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS25110

Experiment: 24hr PHYTO7 MOI 1

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBPHYT_RS25105 and BPHYT_RS25110 are separated by 28 nucleotidesBPHYT_RS25110 and BPHYT_RS25115 overlap by 4 nucleotides BPHYT_RS25105: BPHYT_RS25105 - sarcosine oxidase subunit beta, at 1,205,073 to 1,206,317 _RS25105 BPHYT_RS25110: BPHYT_RS25110 - sarcosine oxidase subunit delta, at 1,206,346 to 1,206,684 _RS25110 BPHYT_RS25115: BPHYT_RS25115 - sarcosine oxidase subunit alpha, at 1,206,681 to 1,209,683 _RS25115 Position (kb) 1206 1207Strain fitness (log2 ratio) -2 -1 0 1at 1205.398 kb on - strand, within BPHYT_RS25105at 1205.398 kb on - strand, within BPHYT_RS25105at 1205.914 kb on - strand, within BPHYT_RS25105at 1205.915 kb on + strand, within BPHYT_RS25105at 1206.572 kb on - strand, within BPHYT_RS25110at 1206.955 kb on - strandat 1207.056 kb on + strand, within BPHYT_RS25115at 1207.057 kb on - strand, within BPHYT_RS25115at 1207.060 kb on - strand, within BPHYT_RS25115at 1207.149 kb on - strand, within BPHYT_RS25115at 1207.617 kb on + strand, within BPHYT_RS25115at 1207.630 kb on - strand, within BPHYT_RS25115at 1207.670 kb on + strand, within BPHYT_RS25115

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 24hr PHYTO7 MOI 1
remove
1,205,398 - BPHYT_RS25105 0.26 +0.2
1,205,398 - BPHYT_RS25105 0.26 +0.4
1,205,914 - BPHYT_RS25105 0.68 -0.4
1,205,915 + BPHYT_RS25105 0.68 +0.0
1,206,572 - BPHYT_RS25110 0.67 -0.1
1,206,955 - -0.0
1,207,056 + BPHYT_RS25115 0.12 -0.6
1,207,057 - BPHYT_RS25115 0.13 +0.2
1,207,060 - BPHYT_RS25115 0.13 +1.6
1,207,149 - BPHYT_RS25115 0.16 -0.7
1,207,617 + BPHYT_RS25115 0.31 -2.3
1,207,630 - BPHYT_RS25115 0.32 -0.1
1,207,670 + BPHYT_RS25115 0.33 -0.9

Or see this region's nucleotide sequence