Experiment: 24hr PHYTO7 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS23740 and BPHYT_RS23745 are separated by 277 nucleotides BPHYT_RS23745 and BPHYT_RS23750 are separated by 202 nucleotides
BPHYT_RS23740: BPHYT_RS23740 - AraC family transcriptional regulator, at 894,037 to 894,792
_RS23740
BPHYT_RS23745: BPHYT_RS23745 - hypothetical protein, at 895,070 to 895,306
_RS23745
BPHYT_RS23750: BPHYT_RS23750 - phosphonate ABC transporter substrate-binding protein, at 895,509 to 896,597
_RS23750
Position (kb) 895
896 Strain fitness (log2 ratio) -2
-1
0
1
2 at 894.238 kb on - strand, within BPHYT_RS23740 at 894.388 kb on + strand, within BPHYT_RS23740 at 894.389 kb on - strand, within BPHYT_RS23740 at 894.473 kb on + strand, within BPHYT_RS23740 at 894.474 kb on - strand, within BPHYT_RS23740 at 894.474 kb on - strand, within BPHYT_RS23740 at 894.474 kb on - strand, within BPHYT_RS23740 at 894.583 kb on + strand, within BPHYT_RS23740 at 894.835 kb on - strand at 894.939 kb on - strand at 894.981 kb on + strand at 895.040 kb on - strand at 895.040 kb on - strand at 895.040 kb on - strand at 895.061 kb on - strand at 895.305 kb on - strand at 895.635 kb on + strand, within BPHYT_RS23750 at 895.635 kb on + strand, within BPHYT_RS23750 at 895.662 kb on + strand, within BPHYT_RS23750 at 895.843 kb on - strand, within BPHYT_RS23750 at 895.857 kb on + strand, within BPHYT_RS23750 at 895.858 kb on - strand, within BPHYT_RS23750 at 895.920 kb on + strand, within BPHYT_RS23750 at 895.921 kb on - strand, within BPHYT_RS23750 at 896.148 kb on + strand, within BPHYT_RS23750
Per-strain Table
Position Strand Gene LocusTag Fraction 24hr PHYTO7 MOI 1 remove 894,238 - BPHYT_RS23740 0.27 +0.5 894,388 + BPHYT_RS23740 0.46 -0.7 894,389 - BPHYT_RS23740 0.47 +1.9 894,473 + BPHYT_RS23740 0.58 -2.3 894,474 - BPHYT_RS23740 0.58 -2.6 894,474 - BPHYT_RS23740 0.58 -1.7 894,474 - BPHYT_RS23740 0.58 -1.1 894,583 + BPHYT_RS23740 0.72 +0.3 894,835 - -0.8 894,939 - +1.4 894,981 + +0.5 895,040 - +0.2 895,040 - -1.9 895,040 - -1.0 895,061 - -0.8 895,305 - +0.2 895,635 + BPHYT_RS23750 0.12 +0.7 895,635 + BPHYT_RS23750 0.12 +2.6 895,662 + BPHYT_RS23750 0.14 -0.9 895,843 - BPHYT_RS23750 0.31 +0.0 895,857 + BPHYT_RS23750 0.32 -1.6 895,858 - BPHYT_RS23750 0.32 +0.0 895,920 + BPHYT_RS23750 0.38 +0.1 895,921 - BPHYT_RS23750 0.38 -0.1 896,148 + BPHYT_RS23750 0.59 +0.4
Or see this region's nucleotide sequence