Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS23480

Experiment: 24hr PHYTO7 MOI 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS23475 and BPHYT_RS23480 are separated by 339 nucleotidesBPHYT_RS23480 and BPHYT_RS23485 are separated by 27 nucleotidesBPHYT_RS23485 and BPHYT_RS23490 are separated by 105 nucleotides BPHYT_RS23475: BPHYT_RS23475 - luciferase, at 834,026 to 835,033 _RS23475 BPHYT_RS23480: BPHYT_RS23480 - hypothetical protein, at 835,373 to 835,894 _RS23480 BPHYT_RS23485: BPHYT_RS23485 - glyoxalase, at 835,922 to 836,344 _RS23485 BPHYT_RS23490: BPHYT_RS23490 - hypothetical protein, at 836,450 to 836,752 _RS23490 Position (kb) 835 836Strain fitness (log2 ratio) -1 0 1at 835.028 kb on - strandat 835.172 kb on - strandat 835.280 kb on + strandat 835.326 kb on + strandat 835.327 kb on - strandat 835.535 kb on + strand, within BPHYT_RS23480at 835.536 kb on - strand, within BPHYT_RS23480at 835.917 kb on - strandat 836.742 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 24hr PHYTO7 MOI 1
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835,028 - -0.1
835,172 - -1.1
835,280 + +0.1
835,326 + -1.2
835,327 - -0.9
835,535 + BPHYT_RS23480 0.31 -1.3
835,536 - BPHYT_RS23480 0.31 -0.8
835,917 - +0.2
836,742 - -0.8

Or see this region's nucleotide sequence