Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS22985

Experiment: 24hr PHYTO7 MOI 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS22980 and BPHYT_RS22985 are separated by 103 nucleotidesBPHYT_RS22985 and BPHYT_RS22990 are separated by 47 nucleotides BPHYT_RS22980: BPHYT_RS22980 - LysR family transcriptional regulator, at 715,598 to 716,494 _RS22980 BPHYT_RS22985: BPHYT_RS22985 - hypothetical protein, at 716,598 to 717,713 _RS22985 BPHYT_RS22990: BPHYT_RS22990 - nucleobase:cation symporter, at 717,761 to 719,089 _RS22990 Position (kb) 716 717 718Strain fitness (log2 ratio) -2 -1 0 1 2at 715.674 kb on + strandat 716.529 kb on + strandat 717.060 kb on + strand, within BPHYT_RS22985at 717.291 kb on - strand, within BPHYT_RS22985at 717.475 kb on - strand, within BPHYT_RS22985at 717.518 kb on + strand, within BPHYT_RS22985at 717.519 kb on - strand, within BPHYT_RS22985at 717.589 kb on - strand, within BPHYT_RS22985

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Per-strain Table

Position Strand Gene LocusTag Fraction 24hr PHYTO7 MOI 1
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715,674 + -0.8
716,529 + -2.2
717,060 + BPHYT_RS22985 0.41 +0.3
717,291 - BPHYT_RS22985 0.62 +2.3
717,475 - BPHYT_RS22985 0.79 -0.7
717,518 + BPHYT_RS22985 0.82 -1.1
717,519 - BPHYT_RS22985 0.83 +1.1
717,589 - BPHYT_RS22985 0.89 -0.1

Or see this region's nucleotide sequence