Experiment: 24hr PHYTO7 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS22675 and BPHYT_RS22680 are separated by 318 nucleotides BPHYT_RS22680 and BPHYT_RS22685 overlap by 4 nucleotides BPHYT_RS22685 and BPHYT_RS22690 are separated by 49 nucleotides
BPHYT_RS22675: BPHYT_RS22675 - 4-hydroxyphenylpyruvate dioxygenase, at 642,301 to 644,184
_RS22675
BPHYT_RS22680: BPHYT_RS22680 - 3-dehydroquinate dehydratase, at 644,503 to 644,958
_RS22680
BPHYT_RS22685: BPHYT_RS22685 - shikimate 5-dehydrogenase, at 644,955 to 645,869
_RS22685
BPHYT_RS22690: BPHYT_RS22690 - D-galactonate transporter, at 645,919 to 647,295
_RS22690
Position (kb) 644
645
646 Strain fitness (log2 ratio) -1
0
1
2
3
4 at 644.575 kb on + strand, within BPHYT_RS22680 at 644.575 kb on + strand, within BPHYT_RS22680 at 644.748 kb on + strand, within BPHYT_RS22680 at 644.809 kb on - strand, within BPHYT_RS22680 at 644.851 kb on + strand, within BPHYT_RS22680 at 644.902 kb on + strand, within BPHYT_RS22680 at 644.903 kb on - strand, within BPHYT_RS22680 at 644.903 kb on - strand, within BPHYT_RS22680 at 644.903 kb on - strand, within BPHYT_RS22680 at 644.906 kb on + strand, within BPHYT_RS22680 at 644.907 kb on - strand, within BPHYT_RS22680 at 644.938 kb on - strand at 645.225 kb on + strand, within BPHYT_RS22685 at 645.225 kb on + strand, within BPHYT_RS22685 at 645.696 kb on + strand, within BPHYT_RS22685 at 646.007 kb on - strand at 646.048 kb on + strand at 646.153 kb on + strand, within BPHYT_RS22690 at 646.153 kb on + strand, within BPHYT_RS22690 at 646.153 kb on + strand, within BPHYT_RS22690 at 646.153 kb on + strand, within BPHYT_RS22690 at 646.153 kb on + strand, within BPHYT_RS22690 at 646.154 kb on - strand, within BPHYT_RS22690 at 646.154 kb on - strand, within BPHYT_RS22690 at 646.214 kb on - strand, within BPHYT_RS22690 at 646.396 kb on + strand, within BPHYT_RS22690 at 646.483 kb on + strand, within BPHYT_RS22690 at 646.534 kb on + strand, within BPHYT_RS22690 at 646.535 kb on - strand, within BPHYT_RS22690 at 646.582 kb on + strand, within BPHYT_RS22690 at 646.583 kb on - strand, within BPHYT_RS22690 at 646.585 kb on - strand, within BPHYT_RS22690 at 646.786 kb on + strand, within BPHYT_RS22690 at 646.786 kb on + strand, within BPHYT_RS22690 at 646.806 kb on + strand, within BPHYT_RS22690
Per-strain Table
Position Strand Gene LocusTag Fraction 24hr PHYTO7 MOI 1 remove 644,575 + BPHYT_RS22680 0.16 -1.7 644,575 + BPHYT_RS22680 0.16 +1.2 644,748 + BPHYT_RS22680 0.54 -0.9 644,809 - BPHYT_RS22680 0.67 -0.2 644,851 + BPHYT_RS22680 0.76 +1.4 644,902 + BPHYT_RS22680 0.88 +4.1 644,903 - BPHYT_RS22680 0.88 -1.1 644,903 - BPHYT_RS22680 0.88 +1.2 644,903 - BPHYT_RS22680 0.88 +0.8 644,906 + BPHYT_RS22680 0.88 +1.5 644,907 - BPHYT_RS22680 0.89 -0.7 644,938 - +1.1 645,225 + BPHYT_RS22685 0.30 +0.5 645,225 + BPHYT_RS22685 0.30 -0.1 645,696 + BPHYT_RS22685 0.81 -0.7 646,007 - -0.1 646,048 + +0.2 646,153 + BPHYT_RS22690 0.17 +0.8 646,153 + BPHYT_RS22690 0.17 +0.4 646,153 + BPHYT_RS22690 0.17 -0.1 646,153 + BPHYT_RS22690 0.17 +0.6 646,153 + BPHYT_RS22690 0.17 +0.5 646,154 - BPHYT_RS22690 0.17 +0.9 646,154 - BPHYT_RS22690 0.17 -0.2 646,214 - BPHYT_RS22690 0.21 -1.1 646,396 + BPHYT_RS22690 0.35 -0.3 646,483 + BPHYT_RS22690 0.41 +0.1 646,534 + BPHYT_RS22690 0.45 +0.5 646,535 - BPHYT_RS22690 0.45 -0.6 646,582 + BPHYT_RS22690 0.48 +0.5 646,583 - BPHYT_RS22690 0.48 -0.5 646,585 - BPHYT_RS22690 0.48 -1.3 646,786 + BPHYT_RS22690 0.63 -0.5 646,786 + BPHYT_RS22690 0.63 +0.6 646,806 + BPHYT_RS22690 0.64 +1.1
Or see this region's nucleotide sequence