Experiment: 24hr PHYTO7 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS21800 and BPHYT_RS21805 are separated by 200 nucleotides BPHYT_RS21805 and BPHYT_RS21810 overlap by 4 nucleotides BPHYT_RS21810 and BPHYT_RS21815 are separated by 69 nucleotides BPHYT_RS21815 and BPHYT_RS21820 are separated by 290 nucleotides
BPHYT_RS21800: BPHYT_RS21800 - hypothetical protein, at 447,590 to 447,892
_RS21800
BPHYT_RS21805: BPHYT_RS21805 - transcriptional regulator, at 448,093 to 448,773
_RS21805
BPHYT_RS21810: BPHYT_RS21810 - histidine kinase, at 448,770 to 450,215
_RS21810
BPHYT_RS21815: BPHYT_RS21815 - hypothetical protein, at 450,285 to 450,557
_RS21815
BPHYT_RS21820: BPHYT_RS21820 - hypothetical protein, at 450,848 to 451,132
_RS21820
Position (kb) 448
449
450
451 Strain fitness (log2 ratio) -1
0
1 at 448.247 kb on + strand, within BPHYT_RS21805 at 448.248 kb on - strand, within BPHYT_RS21805 at 448.248 kb on - strand, within BPHYT_RS21805 at 448.832 kb on + strand at 448.869 kb on + strand at 448.936 kb on + strand, within BPHYT_RS21810 at 449.260 kb on - strand, within BPHYT_RS21810 at 449.319 kb on + strand, within BPHYT_RS21810 at 449.320 kb on - strand, within BPHYT_RS21810 at 449.989 kb on + strand, within BPHYT_RS21810 at 449.989 kb on + strand, within BPHYT_RS21810 at 449.990 kb on - strand, within BPHYT_RS21810 at 450.358 kb on - strand, within BPHYT_RS21815 at 450.860 kb on - strand at 451.143 kb on - strand at 451.192 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction 24hr PHYTO7 MOI 1 remove 448,247 + BPHYT_RS21805 0.23 -1.6 448,248 - BPHYT_RS21805 0.23 -0.9 448,248 - BPHYT_RS21805 0.23 -1.1 448,832 + +0.7 448,869 + -0.1 448,936 + BPHYT_RS21810 0.11 -0.6 449,260 - BPHYT_RS21810 0.34 -0.9 449,319 + BPHYT_RS21810 0.38 +1.4 449,320 - BPHYT_RS21810 0.38 -0.4 449,989 + BPHYT_RS21810 0.84 -0.1 449,989 + BPHYT_RS21810 0.84 -1.0 449,990 - BPHYT_RS21810 0.84 -1.0 450,358 - BPHYT_RS21815 0.27 +0.7 450,860 - +1.3 451,143 - -0.1 451,192 + +0.7
Or see this region's nucleotide sequence