Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS21105

Experiment: 24hr PHYTO7 MOI 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS21100 and BPHYT_RS21105 are separated by 27 nucleotidesBPHYT_RS21105 and BPHYT_RS21110 are separated by 67 nucleotides BPHYT_RS21100: BPHYT_RS21100 - methylmalonate-semialdehyde dehydrogenase, at 294,653 to 296,158 _RS21100 BPHYT_RS21105: BPHYT_RS21105 - phenylhydantoinase, at 296,186 to 297,607 _RS21105 BPHYT_RS21110: BPHYT_RS21110 - FO synthase, at 297,675 to 298,835 _RS21110 Position (kb) 296 297 298Strain fitness (log2 ratio) -1 0 1 2at 296.334 kb on - strand, within BPHYT_RS21105at 296.362 kb on + strand, within BPHYT_RS21105at 296.363 kb on - strand, within BPHYT_RS21105at 296.363 kb on - strand, within BPHYT_RS21105at 296.543 kb on + strand, within BPHYT_RS21105at 297.119 kb on - strand, within BPHYT_RS21105at 297.119 kb on - strand, within BPHYT_RS21105at 297.316 kb on + strand, within BPHYT_RS21105at 297.317 kb on - strand, within BPHYT_RS21105at 297.631 kb on - strandat 297.675 kb on - strandat 297.789 kb on + strandat 297.790 kb on - strandat 297.982 kb on + strand, within BPHYT_RS21110at 298.039 kb on - strand, within BPHYT_RS21110at 298.502 kb on + strand, within BPHYT_RS21110

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Per-strain Table

Position Strand Gene LocusTag Fraction 24hr PHYTO7 MOI 1
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296,334 - BPHYT_RS21105 0.10 +0.4
296,362 + BPHYT_RS21105 0.12 +1.4
296,363 - BPHYT_RS21105 0.12 +2.0
296,363 - BPHYT_RS21105 0.12 -0.3
296,543 + BPHYT_RS21105 0.25 -0.0
297,119 - BPHYT_RS21105 0.66 +0.3
297,119 - BPHYT_RS21105 0.66 -0.3
297,316 + BPHYT_RS21105 0.79 -0.5
297,317 - BPHYT_RS21105 0.80 -0.4
297,631 - +1.2
297,675 - -1.6
297,789 + +2.0
297,790 - -1.2
297,982 + BPHYT_RS21110 0.26 -1.5
298,039 - BPHYT_RS21110 0.31 -0.3
298,502 + BPHYT_RS21110 0.71 +2.0

Or see this region's nucleotide sequence