Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS20075

Experiment: 24hr PHYTO7 MOI 1

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBPHYT_RS20070 and BPHYT_RS20075 are separated by 335 nucleotidesBPHYT_RS20075 and BPHYT_RS20080 are separated by 510 nucleotides BPHYT_RS20070: BPHYT_RS20070 - hypothetical protein, at 45,686 to 47,119 _RS20070 BPHYT_RS20075: BPHYT_RS20075 - hypothetical protein, at 47,455 to 47,667 _RS20075 BPHYT_RS20080: BPHYT_RS20080 - ABC transporter permease, at 48,178 to 49,041 _RS20080 Position (kb) 47 48Strain fitness (log2 ratio) -1 0 1 2at 46.883 kb on + strandat 47.148 kb on + strandat 47.473 kb on + strandat 48.157 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction 24hr PHYTO7 MOI 1
remove
46,883 + +1.9
47,148 + +0.7
47,473 + +0.5
48,157 + -0.9

Or see this region's nucleotide sequence