Experiment: 24hr PHYTO7 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS16400 and BPHYT_RS16405 are separated by 254 nucleotides BPHYT_RS16405 and BPHYT_RS16410 are separated by 287 nucleotides BPHYT_RS16410 and BPHYT_RS16415 are separated by 34 nucleotides
BPHYT_RS16400: BPHYT_RS16400 - GntR family transcriptional regulator, at 3,720,249 to 3,720,956
_RS16400
BPHYT_RS16405: BPHYT_RS16405 - galactonate dehydratase [EC: 4.2.1.6] (from data) , at 3,721,211 to 3,722,359
_RS16405
BPHYT_RS16410: BPHYT_RS16410 - hypothetical protein, at 3,722,647 to 3,722,949
_RS16410
BPHYT_RS16415: BPHYT_RS16415 - hypothetical protein, at 3,722,984 to 3,723,193
_RS16415
Position (kb)
3721
3722
3723 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 3720.250 kb on + strand at 3720.347 kb on + strand, within BPHYT_RS16400 at 3720.348 kb on - strand, within BPHYT_RS16400 at 3720.501 kb on + strand, within BPHYT_RS16400 at 3720.501 kb on + strand, within BPHYT_RS16400 at 3720.501 kb on + strand, within BPHYT_RS16400 at 3720.502 kb on - strand, within BPHYT_RS16400 at 3720.502 kb on - strand, within BPHYT_RS16400 at 3720.575 kb on + strand, within BPHYT_RS16400 at 3720.575 kb on + strand, within BPHYT_RS16400 at 3720.575 kb on + strand, within BPHYT_RS16400 at 3720.575 kb on + strand, within BPHYT_RS16400 at 3720.604 kb on + strand, within BPHYT_RS16400 at 3720.605 kb on - strand, within BPHYT_RS16400 at 3720.674 kb on - strand, within BPHYT_RS16400 at 3720.863 kb on - strand, within BPHYT_RS16400 at 3720.926 kb on + strand at 3720.954 kb on + strand at 3720.960 kb on + strand at 3720.960 kb on + strand at 3720.961 kb on - strand at 3721.057 kb on - strand at 3721.077 kb on - strand at 3721.103 kb on + strand at 3721.103 kb on + strand at 3721.103 kb on + strand at 3721.103 kb on + strand at 3721.104 kb on - strand at 3721.104 kb on - strand at 3721.104 kb on - strand at 3721.104 kb on - strand at 3721.122 kb on + strand at 3721.123 kb on - strand at 3721.123 kb on - strand at 3721.361 kb on + strand, within BPHYT_RS16405 at 3721.412 kb on + strand, within BPHYT_RS16405 at 3721.412 kb on + strand, within BPHYT_RS16405 at 3721.412 kb on + strand, within BPHYT_RS16405 at 3721.412 kb on + strand, within BPHYT_RS16405 at 3721.413 kb on - strand, within BPHYT_RS16405 at 3721.413 kb on - strand, within BPHYT_RS16405 at 3721.413 kb on - strand, within BPHYT_RS16405 at 3721.413 kb on - strand, within BPHYT_RS16405 at 3721.413 kb on - strand, within BPHYT_RS16405 at 3721.428 kb on - strand at 3721.559 kb on + strand, within BPHYT_RS16405 at 3721.559 kb on + strand, within BPHYT_RS16405 at 3721.559 kb on + strand, within BPHYT_RS16405 at 3721.559 kb on + strand, within BPHYT_RS16405 at 3721.560 kb on - strand, within BPHYT_RS16405 at 3721.600 kb on + strand, within BPHYT_RS16405 at 3721.818 kb on - strand, within BPHYT_RS16405 at 3721.818 kb on - strand, within BPHYT_RS16405 at 3721.922 kb on + strand, within BPHYT_RS16405 at 3722.121 kb on - strand, within BPHYT_RS16405 at 3722.159 kb on + strand, within BPHYT_RS16405 at 3722.159 kb on + strand, within BPHYT_RS16405 at 3722.186 kb on + strand, within BPHYT_RS16405 at 3722.187 kb on - strand, within BPHYT_RS16405 at 3722.187 kb on - strand, within BPHYT_RS16405 at 3722.436 kb on + strand at 3722.437 kb on - strand at 3722.471 kb on + strand at 3722.471 kb on + strand at 3722.472 kb on - strand at 3722.472 kb on - strand at 3722.472 kb on - strand at 3722.668 kb on + strand at 3722.669 kb on - strand at 3722.841 kb on + strand, within BPHYT_RS16410 at 3722.841 kb on + strand, within BPHYT_RS16410 at 3722.841 kb on + strand, within BPHYT_RS16410 at 3722.841 kb on + strand, within BPHYT_RS16410 at 3722.842 kb on - strand, within BPHYT_RS16410 at 3722.842 kb on - strand, within BPHYT_RS16410 at 3722.842 kb on - strand, within BPHYT_RS16410 at 3722.842 kb on - strand, within BPHYT_RS16410 at 3722.842 kb on - strand, within BPHYT_RS16410 at 3722.845 kb on + strand, within BPHYT_RS16410 at 3722.846 kb on - strand, within BPHYT_RS16410 at 3722.846 kb on - strand, within BPHYT_RS16410 at 3722.846 kb on - strand, within BPHYT_RS16410 at 3722.846 kb on - strand, within BPHYT_RS16410 at 3722.846 kb on - strand, within BPHYT_RS16410 at 3722.846 kb on - strand, within BPHYT_RS16410 at 3722.948 kb on - strand at 3723.201 kb on - strand at 3723.204 kb on - strand at 3723.238 kb on + strand at 3723.239 kb on - strand at 3723.342 kb on - strand at 3723.353 kb on + strand at 3723.353 kb on + strand at 3723.353 kb on + strand at 3723.353 kb on + strand at 3723.353 kb on + strand at 3723.354 kb on - strand at 3723.354 kb on - strand at 3723.354 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 24hr PHYTO7 MOI 1 remove 3,720,250 + -0.4 3,720,347 + BPHYT_RS16400 0.14 -0.3 3,720,348 - BPHYT_RS16400 0.14 -1.1 3,720,501 + BPHYT_RS16400 0.36 -0.9 3,720,501 + BPHYT_RS16400 0.36 -0.2 3,720,501 + BPHYT_RS16400 0.36 -0.6 3,720,502 - BPHYT_RS16400 0.36 +0.8 3,720,502 - BPHYT_RS16400 0.36 +0.1 3,720,575 + BPHYT_RS16400 0.46 +0.2 3,720,575 + BPHYT_RS16400 0.46 -0.6 3,720,575 + BPHYT_RS16400 0.46 -0.5 3,720,575 + BPHYT_RS16400 0.46 -2.2 3,720,604 + BPHYT_RS16400 0.50 -1.1 3,720,605 - BPHYT_RS16400 0.50 -0.5 3,720,674 - BPHYT_RS16400 0.60 -0.4 3,720,863 - BPHYT_RS16400 0.87 -2.8 3,720,926 + +0.1 3,720,954 + -1.9 3,720,960 + +3.0 3,720,960 + +2.2 3,720,961 - -0.5 3,721,057 - +0.2 3,721,077 - +0.2 3,721,103 + -0.9 3,721,103 + -0.8 3,721,103 + +0.3 3,721,103 + -1.2 3,721,104 - +0.6 3,721,104 - +0.1 3,721,104 - +0.2 3,721,104 - -3.0 3,721,122 + +1.1 3,721,123 - -1.3 3,721,123 - -1.8 3,721,361 + BPHYT_RS16405 0.13 +0.2 3,721,412 + BPHYT_RS16405 0.17 -0.6 3,721,412 + BPHYT_RS16405 0.17 +1.8 3,721,412 + BPHYT_RS16405 0.17 +1.2 3,721,412 + BPHYT_RS16405 0.17 +0.4 3,721,413 - BPHYT_RS16405 0.18 -0.1 3,721,413 - BPHYT_RS16405 0.18 -0.1 3,721,413 - BPHYT_RS16405 0.18 +1.8 3,721,413 - BPHYT_RS16405 0.18 +2.4 3,721,413 - BPHYT_RS16405 0.18 -0.1 3,721,428 - -0.2 3,721,559 + BPHYT_RS16405 0.30 +0.3 3,721,559 + BPHYT_RS16405 0.30 +0.3 3,721,559 + BPHYT_RS16405 0.30 -1.0 3,721,559 + BPHYT_RS16405 0.30 -0.1 3,721,560 - BPHYT_RS16405 0.30 +0.1 3,721,600 + BPHYT_RS16405 0.34 +0.3 3,721,818 - BPHYT_RS16405 0.53 +1.4 3,721,818 - BPHYT_RS16405 0.53 -2.0 3,721,922 + BPHYT_RS16405 0.62 -0.2 3,722,121 - BPHYT_RS16405 0.79 +1.0 3,722,159 + BPHYT_RS16405 0.83 +0.7 3,722,159 + BPHYT_RS16405 0.83 +0.5 3,722,186 + BPHYT_RS16405 0.85 +1.1 3,722,187 - BPHYT_RS16405 0.85 -1.5 3,722,187 - BPHYT_RS16405 0.85 +1.0 3,722,436 + -0.2 3,722,437 - -0.9 3,722,471 + -0.1 3,722,471 + -0.7 3,722,472 - +0.8 3,722,472 - -1.3 3,722,472 - -1.4 3,722,668 + +0.6 3,722,669 - -1.0 3,722,841 + BPHYT_RS16410 0.64 -0.1 3,722,841 + BPHYT_RS16410 0.64 +0.4 3,722,841 + BPHYT_RS16410 0.64 -0.6 3,722,841 + BPHYT_RS16410 0.64 -1.4 3,722,842 - BPHYT_RS16410 0.64 +0.7 3,722,842 - BPHYT_RS16410 0.64 -1.3 3,722,842 - BPHYT_RS16410 0.64 -0.7 3,722,842 - BPHYT_RS16410 0.64 +3.6 3,722,842 - BPHYT_RS16410 0.64 -0.4 3,722,845 + BPHYT_RS16410 0.65 -0.4 3,722,846 - BPHYT_RS16410 0.66 +0.3 3,722,846 - BPHYT_RS16410 0.66 +0.1 3,722,846 - BPHYT_RS16410 0.66 +2.0 3,722,846 - BPHYT_RS16410 0.66 -0.0 3,722,846 - BPHYT_RS16410 0.66 +0.2 3,722,846 - BPHYT_RS16410 0.66 -0.9 3,722,948 - -0.8 3,723,201 - +0.8 3,723,204 - -0.3 3,723,238 + +0.4 3,723,239 - +0.3 3,723,342 - -1.4 3,723,353 + +0.1 3,723,353 + -1.5 3,723,353 + -0.8 3,723,353 + +2.0 3,723,353 + -0.2 3,723,354 - -0.8 3,723,354 - +0.0 3,723,354 - -0.1
Or see this region's nucleotide sequence