Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS12660

Experiment: 24hr PHYTO7 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	24hr PHYTO7 MOI 1
2,886,960	-				+1.3
2,887,059	-				-0.4
2,887,163	+				-1.0
2,887,197	+				+1.9
2,887,197	+				+0.2
2,887,197	+				+0.5
2,887,197	+				+0.5
2,887,197	+				+0.1
2,887,198	-				+0.2
2,887,198	-				+0.1
2,887,662	+				-3.1
2,887,662	+				+2.6
2,887,662	+				+0.0
2,887,663	-				+0.2
2,887,663	-				+0.1
2,887,663	-				-0.6
2,887,683	+				-0.4
2,887,683	+				+0.7
2,887,684	-				-1.4
2,887,684	-				-1.4
2,888,177	-		BPHYT_RS12660	0.42	-0.2
2,888,185	-		BPHYT_RS12660	0.43	-1.1
2,888,245	+		BPHYT_RS12660	0.49	+1.5
2,888,246	-		BPHYT_RS12660	0.49	+1.1
2,888,246	-		BPHYT_RS12660	0.49	+0.9
2,888,379	+		BPHYT_RS12660	0.63	-2.4
2,888,379	+		BPHYT_RS12660	0.63	-0.3
2,888,379	+		BPHYT_RS12660	0.63	+0.5
2,888,380	-		BPHYT_RS12660	0.63	-0.4
2,888,785	-				-1.2
2,888,897	+				-0.2
2,888,935	+				-1.0
2,889,085	+		BPHYT_RS12665	0.41	+0.1
2,889,209	+		BPHYT_RS12665	0.73	+0.9
2,889,209	+		BPHYT_RS12665	0.73	-0.1
2,889,239	+		BPHYT_RS12665	0.81	+0.3
2,889,240	-		BPHYT_RS12665	0.81	-1.5
2,889,243	-		BPHYT_RS12665	0.82	+0.6
2,889,299	+				+0.1
2,889,303	-				-0.5
2,889,477	+				-0.2
2,889,580	-		BPHYT_RS12670	0.33	+0.7
2,889,580	-		BPHYT_RS12670	0.33	-1.2