Experiment: 24hr PHYTO7 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS03305 and BPHYT_RS03310 are separated by 44 nucleotides BPHYT_RS03310 and BPHYT_RS03315 are separated by 259 nucleotides
BPHYT_RS03305: BPHYT_RS03305 - ribosomal RNA small subunit methyltransferase A, at 745,116 to 745,946
_RS03305
BPHYT_RS03310: BPHYT_RS03310 - multidrug DMT transporter permease, at 745,991 to 746,926
_RS03310
BPHYT_RS03315: BPHYT_RS03315 - polymerase, at 747,186 to 748,307
_RS03315
Position (kb) 745
746
747 Strain fitness (log2 ratio) -2
-1
0
1
2 at 745.944 kb on + strand at 745.945 kb on - strand at 745.993 kb on - strand at 746.159 kb on - strand, within BPHYT_RS03310 at 746.159 kb on - strand, within BPHYT_RS03310 at 746.160 kb on + strand, within BPHYT_RS03310 at 746.190 kb on + strand, within BPHYT_RS03310 at 746.191 kb on - strand, within BPHYT_RS03310 at 746.323 kb on - strand, within BPHYT_RS03310 at 746.598 kb on + strand, within BPHYT_RS03310 at 746.599 kb on - strand, within BPHYT_RS03310 at 746.887 kb on + strand at 746.887 kb on + strand at 747.053 kb on + strand at 747.054 kb on - strand at 747.054 kb on - strand at 747.054 kb on - strand at 747.101 kb on - strand at 747.197 kb on - strand at 747.283 kb on - strand at 747.310 kb on - strand, within BPHYT_RS03315 at 747.422 kb on + strand, within BPHYT_RS03315 at 747.422 kb on + strand, within BPHYT_RS03315 at 747.423 kb on - strand, within BPHYT_RS03315 at 747.423 kb on - strand, within BPHYT_RS03315 at 747.450 kb on + strand, within BPHYT_RS03315 at 747.451 kb on - strand, within BPHYT_RS03315 at 747.552 kb on + strand, within BPHYT_RS03315 at 747.678 kb on + strand, within BPHYT_RS03315 at 747.678 kb on + strand, within BPHYT_RS03315 at 747.690 kb on + strand, within BPHYT_RS03315 at 747.690 kb on + strand, within BPHYT_RS03315 at 747.777 kb on + strand, within BPHYT_RS03315 at 747.880 kb on - strand, within BPHYT_RS03315 at 747.912 kb on + strand, within BPHYT_RS03315 at 747.912 kb on + strand, within BPHYT_RS03315 at 747.912 kb on + strand, within BPHYT_RS03315 at 747.912 kb on + strand, within BPHYT_RS03315 at 747.912 kb on + strand, within BPHYT_RS03315 at 747.913 kb on - strand, within BPHYT_RS03315 at 747.913 kb on - strand, within BPHYT_RS03315 at 747.913 kb on - strand, within BPHYT_RS03315 at 747.915 kb on - strand, within BPHYT_RS03315
Per-strain Table
Position Strand Gene LocusTag Fraction 24hr PHYTO7 MOI 1 remove 745,944 + -2.6 745,945 - +1.8 745,993 - -2.6 746,159 - BPHYT_RS03310 0.18 +0.6 746,159 - BPHYT_RS03310 0.18 -1.1 746,160 + BPHYT_RS03310 0.18 -0.3 746,190 + BPHYT_RS03310 0.21 +0.5 746,191 - BPHYT_RS03310 0.21 -0.3 746,323 - BPHYT_RS03310 0.35 -0.5 746,598 + BPHYT_RS03310 0.65 -0.6 746,599 - BPHYT_RS03310 0.65 -0.3 746,887 + -1.4 746,887 + -0.9 747,053 + -1.0 747,054 - -0.7 747,054 - +0.4 747,054 - -0.0 747,101 - -0.2 747,197 - +0.9 747,283 - -0.1 747,310 - BPHYT_RS03315 0.11 -0.7 747,422 + BPHYT_RS03315 0.21 +0.8 747,422 + BPHYT_RS03315 0.21 +0.4 747,423 - BPHYT_RS03315 0.21 -0.7 747,423 - BPHYT_RS03315 0.21 -0.2 747,450 + BPHYT_RS03315 0.24 -0.0 747,451 - BPHYT_RS03315 0.24 -1.1 747,552 + BPHYT_RS03315 0.33 -0.2 747,678 + BPHYT_RS03315 0.44 -0.2 747,678 + BPHYT_RS03315 0.44 -0.3 747,690 + BPHYT_RS03315 0.45 +1.0 747,690 + BPHYT_RS03315 0.45 -0.5 747,777 + BPHYT_RS03315 0.53 +1.2 747,880 - BPHYT_RS03315 0.62 -0.8 747,912 + BPHYT_RS03315 0.65 -1.6 747,912 + BPHYT_RS03315 0.65 +0.4 747,912 + BPHYT_RS03315 0.65 -1.7 747,912 + BPHYT_RS03315 0.65 -0.9 747,912 + BPHYT_RS03315 0.65 -1.8 747,913 - BPHYT_RS03315 0.65 -1.4 747,913 - BPHYT_RS03315 0.65 -0.8 747,913 - BPHYT_RS03315 0.65 +0.0 747,915 - BPHYT_RS03315 0.65 -0.9
Or see this region's nucleotide sequence