Experiment: 24hr PHYTO7 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS02020 and BPHYT_RS02025 are separated by 52 nucleotides BPHYT_RS02025 and BPHYT_RS02030 are separated by 122 nucleotides
BPHYT_RS02020: BPHYT_RS02020 - filamentous hemagglutinin family outer membrane protein, at 460,835 to 463,273
_RS02020
BPHYT_RS02025: BPHYT_RS02025 - peptide ABC transporter permease, at 463,326 to 465,038
_RS02025
BPHYT_RS02030: BPHYT_RS02030 - potassium channel protein, at 465,161 to 466,120
_RS02030
Position (kb) 463
464
465
466 Strain fitness (log2 ratio) -2
-1
0
1
2 at 462.477 kb on + strand, within BPHYT_RS02020 at 462.715 kb on + strand, within BPHYT_RS02020 at 462.715 kb on + strand, within BPHYT_RS02020 at 462.889 kb on + strand at 463.017 kb on + strand, within BPHYT_RS02020 at 463.017 kb on + strand, within BPHYT_RS02020 at 463.018 kb on - strand, within BPHYT_RS02020 at 463.291 kb on + strand at 463.295 kb on + strand at 463.296 kb on - strand at 463.550 kb on - strand, within BPHYT_RS02025 at 463.551 kb on + strand, within BPHYT_RS02025 at 463.552 kb on - strand, within BPHYT_RS02025 at 463.676 kb on + strand, within BPHYT_RS02025 at 463.736 kb on - strand, within BPHYT_RS02025 at 463.773 kb on + strand, within BPHYT_RS02025 at 463.909 kb on + strand, within BPHYT_RS02025 at 463.910 kb on - strand, within BPHYT_RS02025 at 463.910 kb on - strand, within BPHYT_RS02025 at 463.910 kb on - strand, within BPHYT_RS02025 at 463.985 kb on - strand, within BPHYT_RS02025 at 464.347 kb on + strand, within BPHYT_RS02025 at 465.286 kb on - strand, within BPHYT_RS02030 at 465.433 kb on + strand, within BPHYT_RS02030 at 465.434 kb on - strand, within BPHYT_RS02030 at 465.536 kb on - strand, within BPHYT_RS02030 at 465.759 kb on + strand, within BPHYT_RS02030 at 465.760 kb on - strand, within BPHYT_RS02030 at 465.880 kb on - strand, within BPHYT_RS02030 at 465.880 kb on - strand, within BPHYT_RS02030 at 465.969 kb on + strand, within BPHYT_RS02030 at 465.969 kb on + strand, within BPHYT_RS02030 at 465.970 kb on - strand, within BPHYT_RS02030
Per-strain Table
Position Strand Gene LocusTag Fraction 24hr PHYTO7 MOI 1 remove 462,477 + BPHYT_RS02020 0.67 +0.6 462,715 + BPHYT_RS02020 0.77 +0.5 462,715 + BPHYT_RS02020 0.77 +0.2 462,889 + -1.1 463,017 + BPHYT_RS02020 0.89 +0.1 463,017 + BPHYT_RS02020 0.89 +0.0 463,018 - BPHYT_RS02020 0.90 +1.3 463,291 + +0.4 463,295 + +0.3 463,296 - +0.6 463,550 - BPHYT_RS02025 0.13 +1.9 463,551 + BPHYT_RS02025 0.13 -1.1 463,552 - BPHYT_RS02025 0.13 +0.1 463,676 + BPHYT_RS02025 0.20 -1.1 463,736 - BPHYT_RS02025 0.24 -1.6 463,773 + BPHYT_RS02025 0.26 -0.4 463,909 + BPHYT_RS02025 0.34 +0.9 463,910 - BPHYT_RS02025 0.34 -0.4 463,910 - BPHYT_RS02025 0.34 +1.5 463,910 - BPHYT_RS02025 0.34 -0.1 463,985 - BPHYT_RS02025 0.38 -1.8 464,347 + BPHYT_RS02025 0.60 -0.7 465,286 - BPHYT_RS02030 0.13 -0.9 465,433 + BPHYT_RS02030 0.28 +2.1 465,434 - BPHYT_RS02030 0.28 +1.9 465,536 - BPHYT_RS02030 0.39 +2.4 465,759 + BPHYT_RS02030 0.62 +0.1 465,760 - BPHYT_RS02030 0.62 +0.5 465,880 - BPHYT_RS02030 0.75 -0.9 465,880 - BPHYT_RS02030 0.75 +0.4 465,969 + BPHYT_RS02030 0.84 -0.1 465,969 + BPHYT_RS02030 0.84 -1.9 465,970 - BPHYT_RS02030 0.84 +0.4
Or see this region's nucleotide sequence