Experiment: 24hr PHYTO7 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS01055 and BPHYT_RS01060 are separated by 79 nucleotides BPHYT_RS01060 and BPHYT_RS01065 are separated by 161 nucleotides
BPHYT_RS01055: BPHYT_RS01055 - LysR family transcriptional regulator, at 240,736 to 241,665
_RS01055
BPHYT_RS01060: BPHYT_RS01060 - alcohol dehydrogenase, at 241,745 to 242,998
_RS01060
BPHYT_RS01065: BPHYT_RS01065 - GMC family oxidoreductase, at 243,160 to 244,938
_RS01065
Position (kb) 241
242
243 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 240.750 kb on - strand at 240.768 kb on + strand at 241.096 kb on + strand, within BPHYT_RS01055 at 241.182 kb on + strand, within BPHYT_RS01055 at 241.183 kb on - strand, within BPHYT_RS01055 at 241.183 kb on - strand, within BPHYT_RS01055 at 241.183 kb on - strand, within BPHYT_RS01055 at 241.244 kb on - strand, within BPHYT_RS01055 at 241.557 kb on + strand, within BPHYT_RS01055 at 241.687 kb on + strand at 241.687 kb on + strand at 241.688 kb on - strand at 242.077 kb on - strand, within BPHYT_RS01060 at 242.077 kb on - strand, within BPHYT_RS01060 at 242.367 kb on + strand, within BPHYT_RS01060 at 242.367 kb on + strand, within BPHYT_RS01060 at 242.367 kb on + strand, within BPHYT_RS01060 at 242.557 kb on + strand, within BPHYT_RS01060 at 242.602 kb on - strand, within BPHYT_RS01060 at 242.605 kb on + strand, within BPHYT_RS01060 at 242.862 kb on + strand, within BPHYT_RS01060 at 242.863 kb on - strand, within BPHYT_RS01060 at 242.885 kb on - strand at 243.139 kb on + strand at 243.139 kb on + strand at 243.139 kb on + strand at 243.140 kb on - strand at 243.140 kb on - strand at 243.195 kb on - strand at 243.224 kb on + strand at 243.257 kb on + strand at 243.510 kb on - strand, within BPHYT_RS01065 at 243.602 kb on + strand, within BPHYT_RS01065 at 243.647 kb on + strand, within BPHYT_RS01065 at 243.648 kb on - strand, within BPHYT_RS01065 at 243.753 kb on - strand, within BPHYT_RS01065 at 243.872 kb on + strand, within BPHYT_RS01065 at 243.872 kb on + strand, within BPHYT_RS01065 at 243.872 kb on + strand, within BPHYT_RS01065 at 243.873 kb on - strand, within BPHYT_RS01065 at 243.947 kb on + strand, within BPHYT_RS01065 at 243.948 kb on - strand, within BPHYT_RS01065
Per-strain Table
Position Strand Gene LocusTag Fraction 24hr PHYTO7 MOI 1 remove 240,750 - +0.0 240,768 + -0.8 241,096 + BPHYT_RS01055 0.39 +0.5 241,182 + BPHYT_RS01055 0.48 -3.5 241,183 - BPHYT_RS01055 0.48 -1.2 241,183 - BPHYT_RS01055 0.48 +0.3 241,183 - BPHYT_RS01055 0.48 +0.7 241,244 - BPHYT_RS01055 0.55 +0.3 241,557 + BPHYT_RS01055 0.88 +0.1 241,687 + -0.2 241,687 + -0.1 241,688 - +0.5 242,077 - BPHYT_RS01060 0.26 -1.7 242,077 - BPHYT_RS01060 0.26 -1.8 242,367 + BPHYT_RS01060 0.50 +0.7 242,367 + BPHYT_RS01060 0.50 -0.1 242,367 + BPHYT_RS01060 0.50 -1.0 242,557 + BPHYT_RS01060 0.65 +0.3 242,602 - BPHYT_RS01060 0.68 -0.0 242,605 + BPHYT_RS01060 0.69 -0.8 242,862 + BPHYT_RS01060 0.89 -4.0 242,863 - BPHYT_RS01060 0.89 -0.3 242,885 - -0.5 243,139 + -1.7 243,139 + +0.3 243,139 + -1.5 243,140 - +0.6 243,140 - +0.5 243,195 - +0.3 243,224 + -1.4 243,257 + -0.6 243,510 - BPHYT_RS01065 0.20 -0.6 243,602 + BPHYT_RS01065 0.25 -2.0 243,647 + BPHYT_RS01065 0.27 -0.2 243,648 - BPHYT_RS01065 0.27 +0.9 243,753 - BPHYT_RS01065 0.33 -0.2 243,872 + BPHYT_RS01065 0.40 +0.9 243,872 + BPHYT_RS01065 0.40 -0.4 243,872 + BPHYT_RS01065 0.40 +0.9 243,873 - BPHYT_RS01065 0.40 -0.5 243,947 + BPHYT_RS01065 0.44 +1.2 243,948 - BPHYT_RS01065 0.44 -0.3
Or see this region's nucleotide sequence