Experiment: 24hr PHYTO7 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS00820 and BPHYT_RS00825 overlap by 4 nucleotides BPHYT_RS00825 and BPHYT_RS00830 are separated by 45 nucleotides
BPHYT_RS00820: BPHYT_RS00820 - type IV secretory pathway protein VirD4, at 184,673 to 186,457
_RS00820
BPHYT_RS00825: BPHYT_RS00825 - DNA replication protein, at 186,454 to 188,367
_RS00825
BPHYT_RS00830: BPHYT_RS00830 - DNA primase, at 188,413 to 190,002
_RS00830
Position (kb) 186
187
188
189 Strain fitness (log2 ratio) -2
-1
0
1 at 185.630 kb on + strand, within BPHYT_RS00820 at 185.630 kb on + strand, within BPHYT_RS00820 at 185.642 kb on + strand, within BPHYT_RS00820 at 185.642 kb on + strand, within BPHYT_RS00820 at 185.697 kb on - strand, within BPHYT_RS00820 at 185.750 kb on + strand, within BPHYT_RS00820 at 185.750 kb on + strand, within BPHYT_RS00820 at 185.750 kb on + strand, within BPHYT_RS00820 at 185.750 kb on + strand, within BPHYT_RS00820 at 185.751 kb on - strand, within BPHYT_RS00820 at 185.751 kb on - strand, within BPHYT_RS00820 at 185.751 kb on - strand, within BPHYT_RS00820 at 185.783 kb on + strand, within BPHYT_RS00820 at 185.784 kb on - strand, within BPHYT_RS00820 at 186.227 kb on + strand, within BPHYT_RS00820 at 186.466 kb on + strand at 186.619 kb on + strand at 186.619 kb on + strand at 186.619 kb on + strand at 186.619 kb on + strand at 186.907 kb on + strand, within BPHYT_RS00825 at 186.908 kb on - strand, within BPHYT_RS00825 at 187.457 kb on + strand, within BPHYT_RS00825 at 187.491 kb on - strand, within BPHYT_RS00825 at 187.580 kb on + strand, within BPHYT_RS00825 at 187.580 kb on + strand at 187.580 kb on + strand, within BPHYT_RS00825 at 187.580 kb on + strand, within BPHYT_RS00825 at 187.581 kb on - strand, within BPHYT_RS00825 at 187.812 kb on + strand, within BPHYT_RS00825 at 187.812 kb on + strand, within BPHYT_RS00825 at 187.812 kb on + strand, within BPHYT_RS00825 at 187.813 kb on - strand, within BPHYT_RS00825 at 187.813 kb on - strand, within BPHYT_RS00825 at 187.996 kb on + strand, within BPHYT_RS00825 at 188.267 kb on + strand at 188.268 kb on - strand at 188.764 kb on + strand, within BPHYT_RS00830 at 188.785 kb on + strand, within BPHYT_RS00830 at 188.836 kb on + strand, within BPHYT_RS00830 at 188.913 kb on + strand, within BPHYT_RS00830 at 188.992 kb on + strand, within BPHYT_RS00830 at 188.993 kb on - strand, within BPHYT_RS00830 at 189.093 kb on - strand, within BPHYT_RS00830 at 189.308 kb on - strand, within BPHYT_RS00830
Per-strain Table
Position Strand Gene LocusTag Fraction 24hr PHYTO7 MOI 1 remove 185,630 + BPHYT_RS00820 0.54 -1.1 185,630 + BPHYT_RS00820 0.54 -0.0 185,642 + BPHYT_RS00820 0.54 +0.3 185,642 + BPHYT_RS00820 0.54 +0.3 185,697 - BPHYT_RS00820 0.57 +0.6 185,750 + BPHYT_RS00820 0.60 -1.1 185,750 + BPHYT_RS00820 0.60 -0.1 185,750 + BPHYT_RS00820 0.60 +0.2 185,750 + BPHYT_RS00820 0.60 -1.1 185,751 - BPHYT_RS00820 0.60 +0.2 185,751 - BPHYT_RS00820 0.60 -0.2 185,751 - BPHYT_RS00820 0.60 +0.6 185,783 + BPHYT_RS00820 0.62 -1.0 185,784 - BPHYT_RS00820 0.62 +0.0 186,227 + BPHYT_RS00820 0.87 -1.2 186,466 + +0.6 186,619 + +0.0 186,619 + +0.3 186,619 + +0.1 186,619 + +0.7 186,907 + BPHYT_RS00825 0.24 +0.1 186,908 - BPHYT_RS00825 0.24 +0.0 187,457 + BPHYT_RS00825 0.52 +1.4 187,491 - BPHYT_RS00825 0.54 -0.1 187,580 + BPHYT_RS00825 0.59 -2.0 187,580 + -1.3 187,580 + BPHYT_RS00825 0.59 -0.2 187,580 + BPHYT_RS00825 0.59 -0.4 187,581 - BPHYT_RS00825 0.59 +0.3 187,812 + BPHYT_RS00825 0.71 -0.4 187,812 + BPHYT_RS00825 0.71 +1.0 187,812 + BPHYT_RS00825 0.71 -0.9 187,813 - BPHYT_RS00825 0.71 -2.2 187,813 - BPHYT_RS00825 0.71 +0.1 187,996 + BPHYT_RS00825 0.81 -0.7 188,267 + +0.5 188,268 - -0.2 188,764 + BPHYT_RS00830 0.22 -1.7 188,785 + BPHYT_RS00830 0.23 +0.3 188,836 + BPHYT_RS00830 0.27 -0.8 188,913 + BPHYT_RS00830 0.31 -0.2 188,992 + BPHYT_RS00830 0.36 +0.2 188,993 - BPHYT_RS00830 0.36 +1.0 189,093 - BPHYT_RS00830 0.43 -0.4 189,308 - BPHYT_RS00830 0.56 -0.4
Or see this region's nucleotide sequence