Experiment: 24hr PHYTO7 MOI 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS00040 and BPHYT_RS00045 overlap by 4 nucleotides BPHYT_RS00045 and BPHYT_RS00050 are separated by 18 nucleotides BPHYT_RS00050 and BPHYT_RS00055 are separated by 72 nucleotides BPHYT_RS00055 and BPHYT_RS00060 are separated by 104 nucleotides
BPHYT_RS00040: BPHYT_RS00040 - hypothetical protein, at 11,305 to 14,187
_RS00040
BPHYT_RS00045: BPHYT_RS00045 - hypothetical protein, at 14,184 to 14,939
_RS00045
BPHYT_RS00050: BPHYT_RS00050 - hypothetical protein, at 14,958 to 15,692
_RS00050
BPHYT_RS00055: BPHYT_RS00055 - hypothetical protein, at 15,765 to 16,016
_RS00055
BPHYT_RS00060: BPHYT_RS00060 - hypothetical protein, at 16,121 to 18,958
_RS00060
Position (kb) 14
15
16 Strain fitness (log2 ratio) -1
0
1
2
3
4
5 at 13.971 kb on + strand at 13.971 kb on + strand at 13.971 kb on + strand at 13.972 kb on - strand at 14.937 kb on + strand at 15.244 kb on + strand, within BPHYT_RS00050 at 15.289 kb on - strand, within BPHYT_RS00050 at 15.327 kb on + strand, within BPHYT_RS00050 at 15.585 kb on + strand, within BPHYT_RS00050 at 15.585 kb on + strand, within BPHYT_RS00050 at 15.585 kb on + strand, within BPHYT_RS00050 at 15.585 kb on + strand, within BPHYT_RS00050 at 15.664 kb on - strand at 15.673 kb on - strand at 15.723 kb on + strand at 15.723 kb on + strand at 15.724 kb on - strand at 15.794 kb on + strand, within BPHYT_RS00055 at 15.795 kb on - strand, within BPHYT_RS00055 at 16.052 kb on - strand at 16.187 kb on + strand at 16.277 kb on + strand at 16.278 kb on - strand at 16.278 kb on - strand at 16.310 kb on + strand at 16.311 kb on - strand at 16.311 kb on - strand at 16.319 kb on + strand at 16.346 kb on + strand at 16.346 kb on + strand at 16.359 kb on - strand at 16.469 kb on - strand, within BPHYT_RS00060 at 16.524 kb on - strand, within BPHYT_RS00060 at 16.553 kb on + strand, within BPHYT_RS00060 at 16.553 kb on + strand, within BPHYT_RS00060 at 16.679 kb on + strand, within BPHYT_RS00060 at 16.680 kb on - strand, within BPHYT_RS00060 at 16.680 kb on - strand, within BPHYT_RS00060
Per-strain Table
Position Strand Gene LocusTag Fraction 24hr PHYTO7 MOI 1 remove 13,971 + -0.6 13,971 + +3.0 13,971 + +1.4 13,972 - -1.7 14,937 + +0.3 15,244 + BPHYT_RS00050 0.39 +0.1 15,289 - BPHYT_RS00050 0.45 +2.2 15,327 + BPHYT_RS00050 0.50 -0.2 15,585 + BPHYT_RS00050 0.85 +0.1 15,585 + BPHYT_RS00050 0.85 +0.0 15,585 + BPHYT_RS00050 0.85 -0.3 15,585 + BPHYT_RS00050 0.85 +0.7 15,664 - +1.2 15,673 - -0.3 15,723 + -0.0 15,723 + +1.0 15,724 - +0.8 15,794 + BPHYT_RS00055 0.12 +1.6 15,795 - BPHYT_RS00055 0.12 +0.5 16,052 - +0.5 16,187 + +1.6 16,277 + +0.1 16,278 - -0.9 16,278 - -0.8 16,310 + -0.6 16,311 - +0.2 16,311 - +0.3 16,319 + -0.0 16,346 + -0.1 16,346 + +0.7 16,359 - -0.7 16,469 - BPHYT_RS00060 0.12 +0.4 16,524 - BPHYT_RS00060 0.14 +5.0 16,553 + BPHYT_RS00060 0.15 -0.1 16,553 + BPHYT_RS00060 0.15 -0.4 16,679 + BPHYT_RS00060 0.20 -0.8 16,680 - BPHYT_RS00060 0.20 -0.4 16,680 - BPHYT_RS00060 0.20 -1.1
Or see this region's nucleotide sequence