Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS26480

Experiment: 24hr PHYTO7 MOI 10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS26470 and BPHYT_RS26475 are separated by 68 nucleotidesBPHYT_RS26475 and BPHYT_RS26480 are separated by 94 nucleotidesBPHYT_RS26480 and BPHYT_RS26485 are separated by 588 nucleotides BPHYT_RS26470: BPHYT_RS26470 - MFS transporter, at 1,509,373 to 1,510,119 _RS26470 BPHYT_RS26475: BPHYT_RS26475 - glutathione S-transferase, at 1,510,188 to 1,510,835 _RS26475 BPHYT_RS26480: BPHYT_RS26480 - peptidase M1, at 1,510,930 to 1,513,113 _RS26480 BPHYT_RS26485: BPHYT_RS26485 - aldo/keto reductase, at 1,513,702 to 1,514,703 _RS26485 Position (kb) 1510 1511 1512 1513 1514Strain fitness (log2 ratio) -2 -1 0 1 2at 1510.797 kb on + strandat 1510.921 kb on + strandat 1511.068 kb on - strandat 1511.214 kb on - strand, within BPHYT_RS26480at 1511.612 kb on + strand, within BPHYT_RS26480at 1512.101 kb on + strand, within BPHYT_RS26480at 1512.105 kb on - strand, within BPHYT_RS26480at 1512.392 kb on + strand, within BPHYT_RS26480at 1512.591 kb on - strand, within BPHYT_RS26480at 1512.624 kb on + strand, within BPHYT_RS26480at 1512.678 kb on - strand, within BPHYT_RS26480at 1512.721 kb on - strand, within BPHYT_RS26480at 1512.870 kb on - strand, within BPHYT_RS26480at 1513.594 kb on - strandat 1514.028 kb on - strand, within BPHYT_RS26485

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Per-strain Table

Position Strand Gene LocusTag Fraction 24hr PHYTO7 MOI 10
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1,510,797 + -1.3
1,510,921 + -2.1
1,511,068 - +1.4
1,511,214 - BPHYT_RS26480 0.13 -0.1
1,511,612 + BPHYT_RS26480 0.31 +0.1
1,512,101 + BPHYT_RS26480 0.54 +0.9
1,512,105 - BPHYT_RS26480 0.54 +0.8
1,512,392 + BPHYT_RS26480 0.67 -0.4
1,512,591 - BPHYT_RS26480 0.76 -0.3
1,512,624 + BPHYT_RS26480 0.78 +1.1
1,512,678 - BPHYT_RS26480 0.80 -0.4
1,512,721 - BPHYT_RS26480 0.82 -1.2
1,512,870 - BPHYT_RS26480 0.89 +2.4
1,513,594 - +0.6
1,514,028 - BPHYT_RS26485 0.33 +0.4

Or see this region's nucleotide sequence