Experiment: 24hr PHYTO7 MOI 10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS23700 and BPHYT_RS23705 are separated by 261 nucleotides BPHYT_RS23705 and BPHYT_RS23710 are separated by 113 nucleotides BPHYT_RS23710 and BPHYT_RS23715 are separated by 443 nucleotides
BPHYT_RS23700: BPHYT_RS23700 - peptidase S1, at 885,006 to 886,667
_RS23700
BPHYT_RS23705: BPHYT_RS23705 - hypothetical protein, at 886,929 to 887,582
_RS23705
BPHYT_RS23710: BPHYT_RS23710 - hypothetical protein, at 887,696 to 888,046
_RS23710
BPHYT_RS23715: BPHYT_RS23715 - hypothetical protein, at 888,490 to 888,756
_RS23715
Position (kb) 886
887
888 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 886.026 kb on + strand, within BPHYT_RS23700 at 886.095 kb on + strand, within BPHYT_RS23700 at 886.118 kb on - strand, within BPHYT_RS23700 at 886.236 kb on + strand, within BPHYT_RS23700 at 886.236 kb on + strand, within BPHYT_RS23700 at 886.237 kb on - strand, within BPHYT_RS23700 at 886.357 kb on - strand, within BPHYT_RS23700 at 886.450 kb on - strand, within BPHYT_RS23700 at 886.538 kb on + strand at 886.546 kb on - strand at 886.546 kb on - strand at 886.596 kb on + strand at 886.666 kb on - strand at 886.824 kb on - strand at 886.824 kb on - strand at 886.824 kb on - strand at 886.824 kb on - strand at 886.841 kb on - strand at 886.854 kb on + strand at 886.854 kb on + strand at 886.855 kb on - strand at 886.858 kb on + strand at 886.858 kb on + strand at 886.858 kb on + strand at 886.859 kb on - strand at 886.859 kb on - strand at 886.878 kb on + strand at 886.882 kb on + strand at 886.899 kb on + strand at 886.899 kb on + strand at 886.900 kb on - strand at 886.900 kb on - strand at 886.988 kb on + strand at 886.988 kb on + strand at 886.988 kb on + strand at 886.988 kb on + strand at 886.989 kb on - strand at 886.989 kb on - strand at 886.989 kb on - strand at 886.993 kb on - strand at 887.096 kb on - strand, within BPHYT_RS23705 at 887.096 kb on - strand, within BPHYT_RS23705 at 887.096 kb on - strand, within BPHYT_RS23705 at 887.628 kb on - strand at 887.628 kb on - strand at 887.846 kb on + strand, within BPHYT_RS23710 at 888.202 kb on + strand at 888.211 kb on - strand at 888.324 kb on - strand at 888.324 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 24hr PHYTO7 MOI 10 remove 886,026 + BPHYT_RS23700 0.61 +0.5 886,095 + BPHYT_RS23700 0.66 -0.8 886,118 - BPHYT_RS23700 0.67 +0.3 886,236 + BPHYT_RS23700 0.74 -1.8 886,236 + BPHYT_RS23700 0.74 +0.7 886,237 - BPHYT_RS23700 0.74 +1.4 886,357 - BPHYT_RS23700 0.81 +0.5 886,450 - BPHYT_RS23700 0.87 +0.2 886,538 + -0.1 886,546 - -0.5 886,546 - +0.0 886,596 + +0.5 886,666 - -0.4 886,824 - +1.2 886,824 - +0.3 886,824 - +0.3 886,824 - +0.8 886,841 - +0.9 886,854 + +1.1 886,854 + +0.0 886,855 - +0.8 886,858 + +0.9 886,858 + +0.4 886,858 + +0.3 886,859 - +1.0 886,859 - +2.9 886,878 + +0.7 886,882 + +0.6 886,899 + -0.6 886,899 + -2.4 886,900 - +1.0 886,900 - +1.1 886,988 + +0.7 886,988 + +1.2 886,988 + +1.2 886,988 + +1.1 886,989 - +1.2 886,989 - +1.9 886,989 - +1.1 886,993 - +0.9 887,096 - BPHYT_RS23705 0.26 +1.3 887,096 - BPHYT_RS23705 0.26 +0.9 887,096 - BPHYT_RS23705 0.26 +0.9 887,628 - +0.1 887,628 - +0.5 887,846 + BPHYT_RS23710 0.43 -1.9 888,202 + -0.6 888,211 - -0.5 888,324 - -0.2 888,324 - -0.7
Or see this region's nucleotide sequence