Experiment: 24hr PHYTO7 MOI 10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS03935 and BPHYT_RS03940 are separated by 73 nucleotides BPHYT_RS03940 and BPHYT_RS03945 are separated by 312 nucleotides
BPHYT_RS03935: BPHYT_RS03935 - CoA transferase, at 889,543 to 890,781
_RS03935
BPHYT_RS03940: BPHYT_RS03940 - MFS transporter, at 890,855 to 892,339
_RS03940
BPHYT_RS03945: BPHYT_RS03945 - hypothetical protein, at 892,652 to 893,005
_RS03945
Position (kb) 890
891
892
893 Strain fitness (log2 ratio) -2
-1
0
1 at 889.936 kb on + strand, within BPHYT_RS03935 at 889.936 kb on + strand, within BPHYT_RS03935 at 889.937 kb on - strand at 889.969 kb on + strand, within BPHYT_RS03935 at 890.024 kb on - strand, within BPHYT_RS03935 at 890.024 kb on - strand, within BPHYT_RS03935 at 890.025 kb on + strand, within BPHYT_RS03935 at 890.025 kb on + strand, within BPHYT_RS03935 at 890.026 kb on - strand, within BPHYT_RS03935 at 890.395 kb on - strand, within BPHYT_RS03935 at 890.880 kb on - strand at 890.919 kb on + strand at 891.389 kb on + strand, within BPHYT_RS03940 at 891.389 kb on + strand, within BPHYT_RS03940 at 891.390 kb on - strand, within BPHYT_RS03940 at 891.390 kb on - strand, within BPHYT_RS03940 at 891.488 kb on + strand, within BPHYT_RS03940 at 891.510 kb on - strand, within BPHYT_RS03940 at 891.822 kb on - strand, within BPHYT_RS03940 at 891.869 kb on - strand, within BPHYT_RS03940 at 892.091 kb on + strand, within BPHYT_RS03940 at 892.097 kb on + strand, within BPHYT_RS03940 at 892.249 kb on + strand at 892.337 kb on + strand at 892.338 kb on - strand at 892.365 kb on - strand at 892.559 kb on + strand at 892.568 kb on + strand at 892.568 kb on + strand at 892.569 kb on - strand at 892.569 kb on - strand at 892.597 kb on + strand at 892.598 kb on - strand at 892.653 kb on + strand at 892.653 kb on + strand at 892.654 kb on - strand at 892.654 kb on - strand at 892.654 kb on - strand at 892.823 kb on + strand, within BPHYT_RS03945 at 892.896 kb on - strand, within BPHYT_RS03945 at 893.112 kb on + strand at 893.191 kb on - strand at 893.193 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction 24hr PHYTO7 MOI 10 remove 889,936 + BPHYT_RS03935 0.32 -0.6 889,936 + BPHYT_RS03935 0.32 -0.6 889,937 - -0.0 889,969 + BPHYT_RS03935 0.34 -0.1 890,024 - BPHYT_RS03935 0.39 +0.2 890,024 - BPHYT_RS03935 0.39 +0.5 890,025 + BPHYT_RS03935 0.39 +0.1 890,025 + BPHYT_RS03935 0.39 -0.1 890,026 - BPHYT_RS03935 0.39 -0.3 890,395 - BPHYT_RS03935 0.69 -2.0 890,880 - -0.3 890,919 + -0.8 891,389 + BPHYT_RS03940 0.36 -0.8 891,389 + BPHYT_RS03940 0.36 -0.4 891,390 - BPHYT_RS03940 0.36 -0.9 891,390 - BPHYT_RS03940 0.36 +0.5 891,488 + BPHYT_RS03940 0.43 +0.7 891,510 - BPHYT_RS03940 0.44 -0.1 891,822 - BPHYT_RS03940 0.65 -1.0 891,869 - BPHYT_RS03940 0.68 +0.5 892,091 + BPHYT_RS03940 0.83 -0.0 892,097 + BPHYT_RS03940 0.84 +1.3 892,249 + +0.0 892,337 + -0.1 892,338 - +1.0 892,365 - +0.1 892,559 + +0.5 892,568 + +0.0 892,568 + -1.6 892,569 - +0.7 892,569 - -0.0 892,597 + +0.2 892,598 - +0.6 892,653 + -0.1 892,653 + +0.6 892,654 - -0.0 892,654 - -1.0 892,654 - +0.1 892,823 + BPHYT_RS03945 0.48 +1.7 892,896 - BPHYT_RS03945 0.69 -1.1 893,112 + -1.0 893,191 - +0.6 893,193 - -0.7
Or see this region's nucleotide sequence